IBIS - 2011 - Annual activity report

IBIS

IBIS - 2011

Project Team Ibis

Members

Overall Objectives

Overview
Highlights of the year

Scientific Foundations

Models: Development and reduction of models of bacterial regulatory networks
Methods: Analysis, simulation, and identification of bacterial regulatory networks
Data: High-precision measurements of gene expression in bacteria

Software

Genetic Network Analyzer (GNA)
WellReader

New Results

Qualitative modeling, simulation, analysis, and verification of gene regulatory networks
Experimental mapping of gene regulatory networks in bacteria
Analysis of metabolic coupling in gene regulatory networks
Parameter estimation for kinetic models of carbon metabolism in bacteria
Structural identification of gene regulatory networks
Stochastic modeling and identification of gene regulatory networks in bacteria
Control of regulatory networks in bacteria

Contracts and Grants with Industry

Genostar

Partnerships and Cooperations

National projects
International projects
International collaborations

Dissemination

Editorial, organizational, and reviewing activities
Other administrative activities
Seminars, presentations, and PhD thesis defenses
Popular science writing
Teaching

Bibliography

Publications of the year

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2011 Team Activity Report

IBIS

Modeling, simulation, measurement, and control of bacterial regulatory networks

Research centre: Grenoble - Rhône-Alpes

In partnership with: Université Joseph Fourier (Grenoble 1)

In collaboration with: Laboratoire Adaptation et Pathogénie des Microorganismes (LAPM)

Field: Computational Sciences for Biology, Medicine and the Environment

Theme: Computational Biology and Bioinformatics

Keywords: Computational Biology, Data Analysis, Gene Expression, Genetic Networks, Identification, Mathematical Biology, Microbiology, Regulatory Networks, Scientific Data, System Analysis And Control