BONSAI - 2012 - Annual activity report

BONSAI

BONSAI - 2012

Project-Team Bonsai

Members

Overall Objectives

Presentation

Scientific Foundations

Combinatorial discrete models and algorithms
High-performance computing
Discrete statistics and probability

Application Domains

Sequence processing for Next Generation Sequencing
Noncoding RNA
Genome structures
Nonribosomal peptides

Software

YASS – Local homology search
Carnac – RNA structure prediction
TFM-Explorer – Identification and analysis of transcription factor binding sites
Regliss – RNA locally optimal structures
RNAspace – A platform for noncoding RNA annotation
CGseq – A toolbox for comparative analysis
SortMeRNA – Metatranscriptome classification
Biomanycores.org – A community for bioinformatics on manycore processors
Norine – A resource for nonribosomal peptides
GkArrays – Indexing high throughput sequencer reads

New Results

High-throughtput sequence processing
Noncoding RNAs
Genomic rearrangements
Nonribosomal peptides

Partnerships and Cooperations

Regional Initiatives
National Initiatives
International Initiatives
International Research Visitors

Dissemination

Scientific Animation
Teaching - Supervision - Juries
Popularization

Bibliography

Publications of the year
References in notes

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2012 Project-Team Activity Report

BONSAI

Bioinformatics and Sequence Analysis

Research centre: Lille - Nord Europe

In partnership with: CNRS, Université des sciences et technologies de Lille (Lille 1)

In collaboration with: Laboratoire d'informatique fondamentale de Lille (LIFL)

Field: Computational Sciences for Biology, Medicine and the Environment

Theme: Computational Biology and Bioinformatics

Keywords: Computational Biology, Genomics, Genome Annotation, High Performance Computing, Non-coding RNA, Nonribosomal Peptides, Genome Rearrangement