GENSCALE - 2014 - Annual activity report

GENSCALE

GENSCALE - 2014

Project-Team Genscale

Members

Overall Objectives

High throughput processing of genomic data

Research Program

Introduction
Data structure
Combinatorial optimization
Parallelism

Application Domains

Sequence comparison
Genome comparison
Protein comparison

New Software and Platforms

Next Generation Sequencing
High throughput sequence comparisons
3D Protein structures

New Results

Highlights of the Year
NGS methodology
NGS applications
HPC and parallelism
Protein Structure

Bilateral Contracts and Grants with Industry

Bilateral Contracts with Industry
Bilateral Grants with Industry

Partnerships and Cooperations

Regional Initiatives
National Initiatives
International Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Administrative duties
Teaching - Supervision - Juries

Bibliography

Major publications
Publications of the year

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2014 Project-Team Activity Report

GENSCALE

Scalable, Optimized and Parallel Algorithms for Genomics

Research centre: Rennes - Bretagne-Atlantique

In partnership with: CNRS, Université Rennes 1, Ecole normale supérieure de Cachan

In collaboration with: Institut de recherche en informatique et systèmes aléatoires (IRISA)

Field: Digital Health, Biology and Earth

Theme: Computational Biology

Keywords: Next Generation Sequencing, Genomics, Protein Structure, Parallelism, Graph