BONSAI - 2011 - Annual activity report

BONSAI

BONSAI - 2011

Project Team Bonsai

Members

Overall Objectives

Presentation

Scientific Foundations

Combinatorial models and algorithms
High-performance computing
Discrete statistics and probability

Application Domains

Application Domains

Software

YASS – local homology search
Carnac – RNA structure prediction
TFM-Explorer – Identification and analysis of transcription factor binding sites
Regliss – RNA locally optimal structures
RNAspace – a platform for noncoding RNA annotation
CGseq – a toolbox for comparative analysis
Biomanycores.org – a community for bioinformatics on manycore processors
Norine – a resource for nonribsomal peptides
GkArrays – indexing high throughput sequencer reads

New Results

High-throughtput sequence processing
Noncoding RNAs
Genome rearrangements
Non-ribosomal peptides

Partnerships and Cooperations

Regional Initiatives
National Initiatives
European Initiatives
International Initiatives

Dissemination

Animation of the scientific community
Teaching
Popular science

Bibliography

Publications of the year
References in notes

Home | Next next

2011 Team Activity Report

BONSAI

Bioinformatics and Sequence Analysis

Research centre: Lille - Nord Europe

In partnership with: CNRS, Université des sciences et technologies de Lille (Lille 1)

In collaboration with: Laboratoire d'informatique fondamentale de Lille (LIFL)

Field: Computational Sciences for Biology, Medicine and the Environment

Theme: Computational Biology and Bioinformatics

Keywords: Computational Biology, Genomics, High Performance Computing, RNA Annotation, Nonribosomal Peptides, Genome Rearrangement