Section: Software

Genome structure

Participants : Jacques Nicolas [contact] , Catherine Belleannée, Pierre Peterlongo, Raoul Vorc'h, Anthony Bretaudeau, Olivier Sallou.

• CRISPI: CRISPR identification. CRISPI is a user-friendly web interface with many graphical tools and facilities allowing extracting CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats), finding out CRISPR in personal sequences or calculating sequence similarity with spacers.

  http://crispi.genouest.org

• Logol is a language and a tool to define biological patterns to look for in one or more sequences (dna/rna/proteins). Patterns can be complex: the tool allows the use of variables to look for repetitions for example, the use of gaps and morphisms (reverse word complement for example), etc.

  http://www.genouest.org/spip.php?article758