Bibliography
Publications of the year
Doctoral Dissertations and Habilitation Theses
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1M. Lorenzi.
Deformation-based morphometry of the brain for the development of surrogate markers in Alzheimer's disease, University of Nice Sophia Antipolis, December 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Marco. Lorenzi/ PhDThesis. pdf -
2J. Relan.
Personalised Electrophysiological Models of Ventricular Tachycardia for Radio Frequency Ablation Therapy Planning, Ecole Nationale Supérieure des Mines de Paris, June 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Jatin. Relan/ JatinRELAN-Thesis-Manuscript_compressed_final. pdf -
3C. Seiler.
Trees on Geometrical Deformations to Model the Statistical Variability of Organs in Medical Images, University of Nice Sophia Antipolis and University of Bern, September 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Christof. Seiler/ Seiler_PhDThesis. pdf
Articles in International Peer-Reviewed Journals
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4B. André, T. Vercauteren, A. M. Buchner, M. Krishna, N. Ayache, M. B. Wallace.
Software for Automated Classification of probe-based Confocal Laser Endomicroscopy Videos of Colorectal Polyps, in: World Journal of Gastroenterology, October 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Barbara. Andre/ ANDRE-WGJ-2012-Submitted. pdf -
5B. André, T. Vercauteren, A. M. Buchner, M. B. Wallace, N. Ayache.
Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval, in: IEEE Transactions on Medical Imaging, June 2012, vol. 31, no 6, p. 1276-1288.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Barbara. Andre/ ANDRE-TMI12-Manuscript. pdf, http:// hal. inria. fr/ inria-00618057/ en/ -
6R. Blanc, C. Seiler, G. Székely, L. Nolte, M. Reyes.
Statistical Model Based Shape Prediction from a Combination of Direct Observations and Various Surrogates, in: Medical Image Analysis (MedIA), 2012, vol. 16, no 6, p. 1156-1166.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Christof. Seiler/ BlancSeilerMedIA2012. pdf -
7H. Cochet, Y. Komatsu, F. Sacher, A. Jadidi, D. Scherr, M. Riffaud, N. Derval, A. Shah, L. Roten, P. Pascale, J. Relan, M. Sermesant, N. Ayache, M. Montaudon, F. Laurent, M. Hocini, M. Haïssaguerre, P. Jaïs.
Integration of Merged Delayed-Enhanced Magnetic Resonance Imaging and Multi-Detector Computed Tomography for the Guidance of Ventricular Tachycardia Ablation: A Pilot Study, in: Journal of Cardiovascular Electrophysiology, 2012.
http://dx. doi. org/ 10. 1111/ jce. 12052 -
8H. Delingette, F. Billet, K. C. L. Wong, M. Sermesant, K. Rhode, M. Ginks, C. Aldo. Rinaldi, R. Razavi, N. Ayache.
Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation, in: Biomedical Engineering, IEEE Transactions on, jan. 2012, vol. 59, no 1, p. 20 -24. [ DOI : 10.1109/TBME.2011.2160347 ]
http://www. inria. fr/ sophia/ asclepios/ Publications/ Herve. Delingette/ Delingette-TBME-2011. pdf, http:// hal. inria. fr/ inria-00616183/ en/ -
9S. Durrleman, S. Allassonnière, S. Joshi.
Sparse Adaptive Parameterization of Variability in Image Ensembles, in: International Journal of Computer Vision, 2012, p. 1-23.
http://dx. doi. org/ 10. 1007/ s11263-012-0556-1 -
10S. Durrleman, X. Pennec, A. Trouvé, N. Ayache, J. Braga.
Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration, in: Journal of Human Evolution, 2012, vol. 62, no 1, p. 74 - 88. [ DOI : 10.1016/j.jhevol.2011.10.004 ]
http://www. inria. fr/ sophia/ asclepios/ Publications/ Stanley. Durrleman/ Durrleman_JHE_2012. pdf -
11S. Durrleman, X. Pennec, A. Trouvé, J. Braga, G. Gerig, N. Ayache.
Toward a Comprehensive Framework for the Spatiotemporal Statistical Analysis of Longitudinal Shape Data, in: International Journal of Computer Vision, November 2012, p. 1-38.
http://dx. doi. org/ 10. 1007/ s11263-012-0592-x -
12B. Michael. Kelm, F. O. Kaster, A. Henning, M.-A. Weber, P. Bachert, P. Boesiger, F. A. Hamprecht, B. H. Menze.
Using spatial prior knowledge in the spectral fitting of MRS images, in: NMR in Biomedicine, 2012, vol. 25, no 1, p. 1-13. [ DOI : 10.1002/nbm.1704 ]
http://hal. inria. fr/ inria-00616193 -
13B. Leonardi, A. Taylor, T. Mansi, I. Voigt, M. Sermesant, X. Pennec, N. Ayache, Y. Boudjemline, G. Pongiglione.
Computational modeling of the right ventricle in repaired tetralogy of Fallot: Can it provide insight into patient treatment?, in: European Heart Journal - Cardiovascular Imaging, nov 2012. [ DOI : 10.1093/ehjci/jes239 ]
http://www. inria. fr/ sophia/ asclepios/ Publications/ Maxime. Sermesant/ EHJCI-2013. pdf -
15M. Lorenzi, X. Pennec.
Geodesics, Parallel Transport & One-parameter Subgroups for Diffeomorphic Image Registration, in: International Journal of Computer Vision, 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Xavier. Pennec/ Lorenzi_Pennec_IJCV2012. pdf -
16S. Marchesseau, H. Delingette, M. Sermesant, N. Ayache.
Fast Parameter Calibration of a Cardiac Electromechanical Model from Medical Images based on the Unscented Transform, in: Biomechanics and Modeling in Mechanobiology, 2012.
http://www-sop. inria. fr/ asclepios/ Publications/ Stephanie. Marchesseau/ BMMB-Marchesseau2012. pdf -
17S. Marchesseau, H. Delingette, M. Sermesant, M. Sorine, K. Rhode, S. Duckett, C. Aldo. Rinaldi, R. Razavi, N. Ayache.
Preliminary Specificity Study of the Bestel-Clément-Sorine Electromechanical Model of the Heart using Parameter Calibration from Medical Images, in: Journal of the Mechanical Behavior of Biomedical Materials, 2012, Available online.
http://www-sop. inria. fr/ asclepios/ Publications/ Stephanie. Marchesseau/ mbioMarchesseau2012. pdf -
18C. Person, V. Louis-Dorr, S. Poussier, O. Commowick, G. Malandain, L. Maillard, D. Wolf, N. Gilet, V. Roch, G. Karcher, P.-Y. Marie.
Voxel-based quantitative analysis of brain images from F-18 Fluorodeoxyglucose Positron Emission Tomography with a Block-Matching algorithm for spatial normalization, in: Clinical Nuclear Medicine, 2012, vol. 37, no 3, p. 268-273. [ DOI : 10.1097/RLU.0b013e3182443b2d ]
http://hal. inria. fr/ hal-00651731 -
19M. Pop, M. Sermesant, G. Liu, J. Relan, T. Mansi, A. Soong, J.-M. Peyrat, M. Truong, P. Fefer, Elliot R. McVeigh, H. Delingette, A. Dick, N. Ayache, G. Wright.
Construction of 3D MR image-based computer models of pathologic hearts, augmented with histology and optical fluorescence imaging to characterize action potential propagation, in: Medical Image Analysis, Feb 2012, vol. 16, no 2, p. 505-523.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Maxime. Sermesant/ MedIA_Mihaela2012. pdf -
20A. Prakosa, M. Sermesant, H. Delingette, S. Marchesseau, E. Saloux, P. Allain, N. Villain, N. Ayache.
Generation of Synthetic but Visually Realistic Time Series of Cardiac Images Combining a Biophysical Model and Clinical Images, in: Medical Imaging, IEEE Transactions on, 2012, to appear.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Adityo. Prakosa/ PrakosaTMI2012. pdf -
21I. Rekik, S. Allassonnière, O. Clatz, E. Geremia, E. Stretton, H. Delingette, N. Ayache.
Tumor Growth Parameters Estimation and Source Localization From a Unique Time Point: Application to Low-grade Gliomas, in: Computer Vision and Image Understanding, 2012, In press. [ DOI : 10.1016/j.cviu.2012.11.001 ]
http://www. sciencedirect. com/ science/ article/ pii/ S1077314212001476 -
22L. Ritacco, C. Seiler, G. Farfalli, L. Nolte, M. Reyes, D. Muscolo, L. Tinao.
Validity of an Automatic Measure Protocol in Distal Femur for Allograft Selection from a Three-Dimensional Virtual Bone Bank System, in: Cell and Tissue Banking, 2012, to appear.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Christof. Seiler/ RitaccoSeilerCTB2012. pdf -
23R. Rossi, M. Pievani, M. Lorenzi, M. Boccardi, R. Beneduce, S. Bignotti, G. Borsci, M. Cotelli, P. Giannakopoulos, Laura R. Magni, L. Rillosi, S. Rosini, G. Rossi, Giovanni B. Frisoni.
Structural brain features of borderline personality and bipolar disorders, in: Psychiatry Research: Neuroimaging, 2012, vol. 12, p. S0925-4927.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Marco. Lorenzi/ Lorenzi-PSY-2012. pdf -
24C. Seiler, A. Gazdhar, M. Reyes, L. Benneker, T. Geiser, K. Siebenrock, B. Gantenbein-Ritter.
Time-Lapse Microscopy and Classification of 2D Human Mesenchymal Stem Cells Based on Cell Shape Picks Up Myogenic from Osteogenic and Adipogenic Differentiation, in: Journal of Tissue Engineering and Regenerative Medicine, 2012, to appear.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Christof. Seiler/ SeilerTERM2012. pdf -
25C. Seiler, X. Pennec, M. Reyes.
Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees, in: Medical Image Analysis (MedIA), 2012, vol. 16, no 7, p. 1371-1384. [ DOI : 10.1016/j.media.2012.05.011 ]
http://www. inria. fr/ sophia/ asclepios/ Publications/ Christof. Seiler/ SeilerPolyaffineTransformationTreesMedIA2012. pdf -
26M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet, P. Moireau, J.-M. Peyrat, K. C. L. Wong, J. Relan, K. Rhode, M. Ginks, P. Lambiase, H. Delingette, M. Sorine, C. Aldo. Rinaldi, D. Chapelle, R. Razavi, N. Ayache.
Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation, in: Medical Image Analysis, 2012, vol. 16, no 1, p. 201-215.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Maxime. Sermesant/ MedIAsermesant2011. pdf, http:// hal. inria. fr/ inria-00616191/ en/ -
27S. Sommer, F. Lauze, M. Nielsen, X. Pennec.
Sparse Multi-Scale Diffeomorphic Registration: the Kernel Bundle Framework, in: J. of Mathematical Imaging and Vision, Dec 2012.
http://www-sop. inria. fr/ asclepios/ Publications/ Xavier. Pennec/ Sommer_JMIV2013. pdf -
28S. Sommer, M. Nielsen, S. Darkner, X. Pennec.
Higher-order momentum distributions and locally affine LDDMM registration, in: SIAM J. on Imaging Science (SIIMS), 2012, In press.
http://www-sop. inria. fr/ asclepios/ Publications/ Xavier. Pennec/ Sommer_SIIMS2013. pdf -
29J. Thariat, P.-Y. Marcy, A. Lacout, L. Ramus, T. Girinsky, Y. Pointreau, G. Malandain.
Radiotherapy and radiology: joint efforts for modern radiation planning and practice, in: Diagn Interv Imaging, May 2012, vol. 93, no 5, p. 342-50. -
30J. Thariat, L. Ramus, P. Maingon, G. Odin, V. Gregoire, V. Darcourt, N. Guevara, M.-H. Orlanducci, S. Marcie, G. Poissonnet, P.-Y. Marcy, A. Bozec, O. Dassonville, L. Castillo, F. Demard, J. Santini, G. Malandain.
DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head-and-neck Cancer, in: Int J Radiat Oncol Biol Phys, April 2012, vol. 82, no 5, p. 1858-65.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Liliane. Ramus/ thariat-ramus_IJROBP_2011. pdf, http:// hal. inria. fr/ inria-00616186/ en/ -
31F. Vichot, H. Cochet, B. Bleuzé, N. Toussaint, P. Jaïs, M. Sermesant.
Cardiac Interventional Guidance using Multimodal Data Processing and Visualisation: medInria as an Interoperability Platform, in: Midas Journal, 2012.
http://www. midasjournal. org/ download/ pdf/ 19873/ IJ_863_2_medInriaInteroperabilityPlatform. pdf
International Conferences with Proceedings
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32H. Bou-Sleiman, C. Seiler, T. Iizuka, L. Nolte, M. Reyes.
Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology, in: Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, Springer, Heidelberg, October 2012, vol. 7510, p. 66–73. -
33M. De Craene, P. Allain, H. Gao, A. Prakosa, S. Marchesseau, L. Hilpert, O. Somphone, H. Delingette, S. Makram-Ebeid, N. Villain, J. D'hooge, M. Sermesant, E. Saloux.
Synthetic and Phantom Setups for the Second cardiac Motion Analysis Challenge (cMAC2), in: Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12), LNCS, Springer, 2012. -
34N. Duchateau, M. De Craene, X. Pennec, B. Merino, M. Sitges, B. Bijnens.
Which Reorientation Framework for the Atlas-Based Comparison of Motion from Cardiac Image Sequences?, in: Proc. of STIA 2012 (Spatio-=Temporal Image Analysis for Longitudinal and Time-Series Image Data, LNCS, Springer, Heidelberg, October 2012, vol. 7570, p. 25-37.
http://dx. doi. org/ 10. 1007/ 978-3-642-33555-6_3 -
35E. Geremia, B. H. Menze, N. Ayache.
Spatial Decision Forests for Glioma Segmentation in Multi-Channel MR Images, in: MICCAI Challenge on Multimodal Brain Tumor Segmentation, October 2012, to appear.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Ezequiel. Geremia/ Geremia-BRATS-2012. pdf -
36E. Geremia, B. H. Menze, M. Prastawa, M.-A. Weber, A. Criminisi, N. Ayache.
Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model, in: MICCAI Workshop on Medical Computer Vision, LNCS, Springer, October 2012, to appear.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Ezequiel. Geremia/ Geremia-MCV-2012. pdf -
37L. Le Folgoc, H. Delingette, A. Criminisi, N. Ayache.
Current-based 4D shape analysis for the mechanical personalization of heart models, in: Proceedings of MCV Workshop at MICCAI 2012, LNCS, Springer, October 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Loic. Le_Folgoc/ LL_MCV2012. pdf, http:// hal. inria. fr/ hal-00746740/ en/ -
38H. Lombaert, L. Grady, X. Pennec, N. Ayache, F. Cheriet.
Spectral Demons - Image Registration via Global Spectral Correspondence, in: Proc. of ECCV (2), LNCS, 2012, no 7573, p. 30-44. [ DOI : 10.1007/978-3-642-33709-3_3 ] -
40M. Lorenzi, N. Ayache, X. Pennec.
Disentangling the normal aging from the pathological Alzheimer's disease progression on cross-sectional structural MR images, in: MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), October 2012, p. 145-154.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Marco. Lorenzi/ Lorenzi-NIBAD2012. pdf -
41M. Lorenzi, N. Ayache, X. Pennec.
Regional flux analysis of longitudinal atrophy in Alzheimer's disease, in: Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, Springer, Heidelberg, Oct 2012, vol. 7510, p. 739–746. [ DOI : 10.1007/978-3-642-33415-3_91 ]
http://www. inria. fr/ sophia/ asclepios/ Publications/ Marco. Lorenzi/ RegionalFluxAnalysis. pdf -
42M. Lorenzi, G. B. Frisoni, N. Ayache, X. Pennec.
Probabilistic Flux Analysis of Cerebral Longitudinal Atrophy, in: MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), October 2012, p. 256-265. -
44K. McLeod, A. Prakosa, T. Mansi, M. Sermesant, X. Pennec.
An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue, in: Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM11), Toronto, LNCS, Springer, September 2012, no 7085, p. 55-67. [ DOI : 10.1007/978-3-642-28326-0_6 ]
http://www. inria. fr/ sophia/ asclepios/ Publications/ Kristin. McLeod/ iLogDemons. pdf -
45K. McLeod, C. Seiler, M. Sermesant, X. Pennec.
A Near-Incompressible Poly-Affine Motion Model for Cardiac Function Analysis, in: Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'12), Nice, LNCS, Springer, October 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Kristin. McLeod/ PolyAffineHeart. pdf -
46A. Prakosa, K. McLeod, M. Sermesant, X. Pennec.
Evaluation of iLogDemons Algorithm for Cardiac Motion Tracking in Synthetic Ultrasound Sequence, in: Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12), LNCS, Springer, October 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Adityo. Prakosa/ PrakosaSTACOM12. pdf -
47N. Savoire, B. André, T. Vercauteren.
Online Blind Calibration of Non-Uniform Photodetectors: Application to Endomicroscopy, in: Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, Springer, Heidelberg, October 2012, To appear.
http://www-sop. inria. fr/ asclepios/ Publications/ Barbara. Andre/ MICCAI-2012-SavoireAndreVercauteren. pdf -
48C. Seiler, X. Pennec, M. Reyes.
Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics, in: Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, Springer, Heidelberg, oct 2012, vol. 7511, p. 130–137. [ DOI : 10.1007/978-3-642-33418-4_17 ]
http://www. inria. fr/ sophia/ asclepios/ Publications/ Christof. Seiler/ SeilerMultiscaleGroupwisePolyaffineRegistrationMICCAI2012. pdf, http:// hal. inria. fr/ inria-00616215/ en/ -
49S. Sommer, M. Nielsen, X. Pennec.
Sparsity and Scale: Compact Representations of Deformation for Diffeomorphic Registration, in: IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012), Breckenridge, Colorado, USA, Jan 2012.
http://hal. inria. fr/ hal-00641357/ PDF/ Sommer. mmbia12. pdf, http:// hal. inria. fr/ hal-00641357/ en/ -
50E. Stretton, E. Mandonnet, E. Geremia, B. H. Menze, H. Delingette, N. Ayache.
Predicting the Location of Glioma Recurrence After a Resection Surgery, in: Proceedings of 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12), Nice, LNCS, Springer, October 2012.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Erin. Stretton/ Miccai2012_Workshop_ErinStretton-Submit. pdf, http:// hal. inria. fr/ -
51H. Talbot, C. Duriez, H. Courtecuisse, J. Relan, M. Sermesant, S. Cotin, H. Delingette.
Towards Real-Time Computation of Cardiac Electrophysiology for Training Simulator, in: Statistical Atlases and Computational Models of the Heart - STACOM 2012 in the 15th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2012, Nice, France, Lecture Notes in Computer Science, Springer, October 2012. -
52H. Talbot, S. Marchesseau, C. Duriez, H. Courtecuisse, J. Relan, M. Sermesant, S. Cotin, H. Delingette.
Interactive Electromechanical Model of the Heart for Patient-Specific Therapy Planning and Training using SOFA, in: Virtual Human Project (VPH), 2012.
http://hal. inria. fr/ hal-00751537 -
53J. Unkelbach, B. H. Menze, A. Motamedi, F. Dittmann, E. Konukoglu, N. Ayache, H. Shih.
Glioblastoma growth modeling for radiotherapy target delineation., in: Proc MICCAI Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therap., 2012, 12 pages p.
http://people. csail. mit. edu/ menze/ papers/ unkelbach_12_glioblastoma. pdf -
54K. C. L. Wong, J. Relan, L. Wang, M. Sermesant, H. Delingette, N. Ayache, P. Shi.
Strain-Based Regional Nonlinear Cardiac Material Properties Estimation From Medical Images, in: Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), LNCS, Springer, Heidelberg, October 2012, To appear.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Jatin. Relan/ KenMICCAI2012. pdf
Scientific Books (or Scientific Book chapters)
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55F. Faure, C. Duriez, H. Delingette, J. Allard, B. Gilles, S. Marchesseau, H. Talbot, H. Courtecuisse, G. Bousquet, I. Peterlik, S. Cotin.
SOFA: A Multi-Model Framework for Interactive Physical Simulation, in: Soft Tissue Biomechanical Modeling for Computer Assisted Surgery, Y. Payan (editor), Springer, June 2012. [ DOI : 10.1007/8415_2012_125 ]
http://hal. inria. fr/ hal-00681539 -
56K. McLeod, T. Mansi, M. Sermesant, G. Pongiglione, X. Pennec.
Statistical Shape Analysis of Surfaces in Medical Images Applied to the Tetralogy of Fallot Heart, in: Modeling in Computational Biology and Biomedicine, Lectures Notes in Mathematical and Computational Biology, Springer, 2012, p. 165-191, In Press. [ DOI : 10.1007/978-3-642-31208-3_5 ]
http://www-sop. inria. fr/ asclepios/ Publications/ Xavier. Pennec/ McLeod_Pennec_CBB. pdf -
57X. Pennec.
Program of the MICCAI 2012 Workshops, Challenges and Tutorials, oct 2012, Printed booklet distributed to 967 participants, 90 pages.
http://www. miccai2012. org/ medias/ File/ miccai_workshop_BD. pdf -
58X. Pennec, V. Arsigny.
Exponential Barycenters of the Canonical Cartan Connection and Invariant Means on Lie Groups, in: Matrix Information Geometry, F. Barbaresco, A. Mishra, F. Nielsen (editors), Springer, May 2012, p. 123-166.
http://hal. inria. fr/ hal-00699361/ PDF/ Bi-Invar-Means. pdf, http:// hal. inria. fr/ hal-00699361
Books or Proceedings Editing
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59N. Ayache, H. Delingette, P. Golland, K. Mori (editors)
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012 - Part I, LNCS, Springer, Nice, France, October 2012, vol. 7510, 746 pages.
http://dx. doi. org/ 10. 1007/ 978-3-642-33415-3 -
60N. Ayache, H. Delingette, P. Golland, K. Mori (editors)
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012 - Part II, LNCS, Springer, Nice, France, October 2012, vol. 7511, 674 pages.
http://dx. doi. org/ 10. 1007/ 978-3-642-33418-4 -
61N. Ayache, H. Delingette, P. Golland, K. Mori (editors)
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012 - Part III, LNCS, Springer, Nice, France, October 2012, vol. 7512, 646 pages.
http://dx. doi. org/ 10. 1007/ 978-3-642-33454-2
Internal Reports
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62M. W. Krueger, J. Relan, Z. Chen, M. Sermesant, N. Ayache, G. Seemann, O. Dössel, N. Linton, C. Aldo. Rinaldi, R. Razavi, K. Rhode, H. Delingette.
Evaluation of RFA planning based on biophysical models, European project euHeart, May 2012.
Patents and standards
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63H. Lombaert, L. Grady, X. Pennec, J.-M. Peyrat, N. Ayache, F. Cheriet.
A System and Method for Finding Accurate Pointwise Correspondences Between Images, 2012, no US patent filling (pending).
Other Publications
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64B. André, T. Vercauteren, A. M. Buchner, M. Krishna, N. Ayache, M. B. Wallace.
Comparison of a Classification Software based on Image Retrieval with the Off-Line Diagnosis of Expert Endoscopists for probe-based Confocal Laser Endomicroscopy (pCLE) of Colorectal Polyps, 2012, Gastrointestinal Endoscopy (DDW 2012), In press.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Barbara. Andre/ ANDRE-DDW12-Abs1-classification. pdf -
65B. André, T. Vercauteren, A. M. Buchner, M. B. Wallace, N. Ayache.
Image-based Semantic Learning Software for Automatic Detection of Discriminative Criteria used for probe-based Confocal Laser Endomicroscopy (pCLE) Diagnosis of Colorectal Polyps, 2012, Gastrointestinal Endoscopy (DDW 2012), In press.
http://www. inria. fr/ sophia/ asclepios/ Publications/ Barbara. Andre/ ANDRE-DDW12-Abs2-semantic6. pdf -
66M. Breuilly, G. Malandain, N. Ayache, J. Darcourt, T. Pourcher, P. Franken.
Simulated breath-hold reconstruction in micro-SPECT: Application to peritoneal metastases expressing NIS as reporter gene, 2012, vol. 53, no 1, 2381 p.
http://jnumedmtg. snmjournals. org/ cgi/ content/ meeting_abstract/ 53/ 1_MeetingAbstracts/ 2381 -
67M. Breuilly, G. Malandain, N. Ayache, P. Franken, J. Darcourt, T. Pourcher.
Simulated breath-hold reconstruction in micro-SPECT: application to peritoneal metastases expressing NIS as reporter gene, Jan 2012, 2nd second Molecular Imaging in Biology and Oncology (MIBO) workshop (MIBO2012), Nice. -
68M. Breuilly, G. Malandain, J. Darcourt, T. Pourcher, P. Franken.
Prise en compte du mouvement respiratoire du petit animal pour la reconstruction 3D TEMP synchronisée : application aux métastases péritonéales, 2012, vol. 36, no 4, p. 188 - 189, 50e colloque de Médecine Nucléaire de Langue Françcaise. [ DOI : 10.1016/j.mednuc.2012.02.108 ]
http://www. sciencedirect. com/ science/ article/ pii/ S0928125812001696 -
69V. Gupta, N. Ayache, X. Pennec.
Towards higher resolution analysis of Clinical Brain Diffusion Images, September 2012, 1st International Symposium on Deep Brain Connectomics, Clermon-Ferrand, France.
http://www. igcnc. fr/ index. php/ animation/ program -
70B. Khanal.
Modeling and simulation of local atrophy in Alzheimer's disease from 3D longitudinal MRI images, EDSTIC, University of Nice, 2012. -
71M. Lorenzi, N. Ayache, X. Pennec, G. B. Frisoni, for the Alzheimer's Disease Neuroimaging Initiative (ADNI).
Differentiating pathological brain atrophy from normal aging: a promising diagnostic tool for Alzheimer's disease, Sep 2012, 2nd Virtual Physiological Human European Conference (VPH2012), London. -
72M. Lorenzi, N. Ayache, X. Pennec, G. B. Frisoni, for the Alzheimer's Disease Neuroimaging Initiative (ADNI).
Disentangling the normal aging from the pathological Alzheimer's disease progression on structural MR images, Oct 2012, 5th Clinical Trials in Alzheimer's Disease (CTAD'12), Monte Carlo. -
73X. Pennec, t. MICCAI Workshops / Challenges / Tutorials Organizers.
Proceedings of the MICCAI 2012 Workshops, Challenges and Tutorials, Oct 2012, USB key distributed to 967 participants, 4080 pages.
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74N. Ayache, J. Duncan (editors)
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75M. Gazzaniga (editor)
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77T. Jiang, N. Navab, J. P. Pluim, M. A. Viergever (editors)
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78T. Jiang, N. Navab, J. P. Pluim, M. A. Viergever (editors)
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79R. H. Taylor, S. Lavallée, G. S. Burdea, R. Mösges (editors)
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80W. Vannier, M. A. Viergever (editors)
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81S. Webb (editor)
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83R. Acharya, R. Wasserman, J. Stevens, C. Hinojosa.
Biomedical Imaging modalities: a tutorial, in: Computerized Medical Imaging and Graphics, 1995, vol. 19, no 1, p. 3–25. -
84M. J. Ackerman.
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85P. Allen.
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86L. Axel, A. Montillo, D. Kim.
Tagged magnetic resonance imaging of the heart: a survey, in: Medical Image Analysis, 2005, vol. 9, no 4, p. 376–393. -
87N. Ayache.
L'analyse automatique des images médicales, état de l'art et perspectives, in: Annales de l'Institut Pasteur, avril–juin 1998, vol. 9, no 1, p. 13–21, numéro spécial sur les progrès récents de l'imagerie médicale. -
88N. Ayache, O. Clatz, H. Delingette, G. Malandain, X. Pennec, M. Sermesant.
Asclepios: a Research Project-Team at Inria for the Analysis and Simulation of Biomedical Images, in: From semantics to computer science: essays in honor of Gilles Kahn, Y. Bertot, G. Huet, J.-J. Lévy, G. Plotkin (editors), Cambridge University Press, 2009.
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89M. Belik, T. Usyk, A. McCulloch.
Computational Methods for Cardiac Electrophysiology, in: Computational Models for the Human Body, N. Ayache (editor), Elsevier, 2004, p. 129–187. -
90H. Delingette, X. Pennec, L. Soler, J. Marescaux, N. Ayache.
Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions, in: Proceedings of the IEEE, September 2006, vol. 94, no 9, p. 1678- 1688.
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91I. L. Dryden, K. V. Mardia.
Statistical Shape Analysis, John Wiley and Sons, 1998. -
92J. Duncan, N. Ayache.
Medical Image Analysis: Progress over two decades and the challenges ahead, in: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2000, vol. 22, no 1, p. 85–106. -
93N. C. Fox, J. M. Schott.
Imaging cerebral atrophy: normal ageing to Alzheimer's disease, in: Lancet, 2004, vol. 363, no 9406. -
94A. Frangi, W. J. Niessen, M. A. Viergever.
Three-dimensional modeling for functional analysis of cardiac images: a review, in: IEEE Trans Med Imaging, January 2001, vol. 20, no 1, p. 2-25. -
95P. C. Franzone, L. Guerri, M. Pennachio, B. Taccardi.
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96E. Haug, H.-Y. Choi, S. Robin, M. Beaugonin.
Human Models for crash and impact Simulation, in: Computational Models for the Human Body, N. Ayache (editor), Elsevier, 2004, p. 231–452. -
97P. Hunter, T. Borg.
Integration from proteins to organs: the Physiome project, in: Nature Reviews - Molecular Cell Biology, 2003, vol. 4, p. 237–243. -
98P. Hunter.
Computational Physiology and the Physiome Project, 2004. -
99C. MacAulay, P. Lane, R. Richards-Kortum.
In vivo pathology: microendoscopy as a new endoscopic imaging modality, in: Gastrointestinal Endoscopy Clinics of North America, 2004, vol. 14, p. 595–620. -
100D. Metaxas, J. Kayes, F. Primanio.
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101M. I. Miller.
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102V. Moreau-Villéger, H. Delingette, M. Sermesant, O. Faris, Elliot R. McVeigh, N. Ayache.
Global and Local Parameter Estimation of a Model of the Electrical Activity of the Heart, Inria, July 2004, no 5269.
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103D. Noble.
Modeling the Heart, from genes to cells to the whole organ, in: Science, 2002, vol. 295, p. 1678–1682. -
104J. Olivo-Marin.
Image Formation and Analysis in Microscopy, june 2004, Invited Session at Int. Symp. on Biomedical Imaging (ISBI). -
105A. Quarteroni, L. Formaggia.
Mathematical Modeling and Numerical Simulation of the Cardiovascular System, in: Computational Models for the Human Body, N. Ayache (editor), Elsevier, 2004, p. 3–128. -
106M. Sermesant, O. Faris, F. Evans, Elliot R. McVeigh, Y. Coudière, H. Delingette, N. Ayache.
Preliminary validation using in vivo measures of a macroscopic electrical model of the heart, in: International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), Juan-les-Pins, France, N. Ayache, H. Delingette (editors), Lecture Notes in Computer Science, Springer-Verlag, 2003, vol. 2673, p. 230–243.
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107P. M. Thompson, K. Hayashi, E. Sowell, N. Gogtay, J. Giedd, J. Rapoport, G. de Zubicaray, A. Janke, S. Rose, J. Semple, D. Doddrell, Y. Wang, T. van Erp, T. Cannon, A. W. Toga.
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108P. M. Thompson, M. I. Miller, J. T. Ratnanather, R. A. Poldrack, T. E. Nichols.
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109D. W. Thompson.
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110K. Van Leemput, F. Maes, D. Vandermeulen, P. Suetens.
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111R. Weissleder, U. Mahmood.
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