Bibliography

Publications of the year

Doctoral Dissertations and Habilitation Theses

1H. Talbot.

Interactive Patient-Specific Simulation of Cardiac Electrophysiology, Université des Sciences et Technologies de Lille, July 2014.

https://hal.inria.fr/tel-01097201

Articles in International Peer-Reviewed Journals

2A. Amelot, E. Stretton, H. Delingette, N. Ayache, S. Froelich, E. Mandonnet.

Expert-validated CSF segmentation of MNI atlas enhances accuracy of virtual glioma growth patterns, in: Journal of Neuro-Oncology, 2014, forthcoming. [ DOI : 10.1007/s11060-014-1645-5 ]

https://hal.inria.fr/hal-01081410
3Y. Komatsu, A. Jadidi, F. Sacher, A. Denis, M. Daly, N. Derval, A. Shah, H. Lehrmann, C.-I. Park, R. Weber, T. Arentz, G. Pache, M. Sermesant, N. Ayache, J. Relan, M. Montaudon, F. Laurent, M. Hocini, M. Haissaguerre, P. Jais, H. Cochet.

Relationship Between MDCT-Imaged Myocardial Fat and Ventricular Tachycardia Substrate in Arrhythmogenic Right Ventricular Cardiomyopathy, in: Journal of the American Heart Association, 2014, vol. 3, n^o 4, 10 p. [ DOI : 10.1161/JAHA.114.000935 ]

https://hal.inria.fr/hal-01095772
4H. Lombaert, L. Grady, X. Pennec, N. Ayache, F. Cheriet.

Spectral Log-Demons: Diffeomorphic Image Registration with Very Large Deformations, in: International Journal of Computer Vision, May 2014, vol. 107, n^o 3, pp. 254-271. [ DOI : 10.1007/s11263-013-0681-5 ]

https://hal.inria.fr/hal-00979616
5M. Lorenzi, X. Pennec, G. B. Frisoni, N. Ayache.

Disentangling Normal Aging from Alzheimer's Disease in Structural MR Images, in: Neurobiology of Aging, September 2014. [ DOI : 10.1016/j.neurobiolaging.2014.07.046 ]

https://hal.inria.fr/hal-01061017
6B. Menze, A. Jakab, S. Bauer, J. Kalpathy-Cramer, K. Farahani, J. Kirby, Y. Burren, N. Porz, J. Slotboom, R. Wiest, L. Lanczi, E. Gerstner, M.-A. Weber, T. Arbel, B. Avants, N. Ayache, P. Buendia, L. Collins, N. Cordier, J. Corso, A. Criminisi, T. Das, H. Delingette, C. Demiralp, C. Durst, M. Dojat, S. Doyle, J. Festa, F. Forbes, E. Geremia, B. Glocker, P. Golland, X. Guo, A. Hamamci, K. Iftekharuddin, R. Jena, N. John, E. Konukoglu, D. Lashkari, J. Antonio Mariz, R. Meier, S. Pereira, D. Precup, S. J. Price, T. Riklin-Raviv, S. Reza, M. Ryan, L. Schwartz, H.-C. Shin, J. Shotton, C. Silva, N. Sousa, N. Subbanna, G. Szekely, T. Taylor, O. Thomas, N. Tustison, G. Unal, F. Vasseur, M. Wintermark, D. Hye Ye, L. Zhao, B. Zhao, D. Zikic, M. Prastawa, M. Reyes, K. Van Leemput.

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS), in: IEEE Transactions on Medical Imaging, 2014, 33 p. [ DOI : 10.1109/TMI.2014.2377694 ]

https://hal.inria.fr/hal-00935640
7A. Porras, M. Alessandrini, M. De Craene, N. Duchateau, M. Sitges, B. Bijnens, H. Delingette, M. Sermesant, J. D'Hooge, A. Frangi, G. Piella.

Improved Myocardial Motion Estimation Combining Tissue Doppler and B-Mode Echocardiographic Images, in: IEEE Transactions on Medical Imaging, June 2014, vol. 33, n^o 11, pp. 2098 - 2106. [ DOI : 10.1109/TMI.2014.2331392 ]

https://hal.inria.fr/hal-01095151
8A. Suinesiaputra, B. Cowan, A. O. Al-Agamy, M. A. Alattar, N. Ayache, A. S. Fahmy, A. M. Khalifa, P. Medrano-Gracia, M.-P. Jolly, A. H. Kadish, D. C. Lee, J. Margeta, S. K. Warﬁeld, A. Young.

A Collaborative Resource to Build Consensus for Automated Left Ventricular Segmentation of Cardiac MR Images, in: Medical Image Analysis, 2014, vol. 18, n^o 1, pp. 50-62. [ DOI : 10.1016/j.media.2013.09.001 ]

https://hal.inria.fr/hal-00857223
9Y. Tarabalka, G. Charpiat, L. Brucker, B. Menze.

Spatio-Temporal Video Segmentation with Shape Growth or Shrinkage Constraint, in: IEEE Transactions on Image Processing, September 2014, vol. 23, n^o 9, pp. 3829-3840.

https://hal.inria.fr/hal-01052543
10K. C. Wong, M. Sermesant, K. Rhode, M. Ginks, C. Aldo Rinaldi, R. Razavi, H. Delingette, N. Ayache.

Velocity-based cardiac contractility personalization from images using derivative-free optimization, in: Journal of the mechanical behavior of biomedical materials, December 2014, 17 p. [ DOI : 10.1016/j.jmbbm.2014.12.002 ]

https://hal.inria.fr/hal-01095725

International Conferences with Proceedings

11M. Alessandrini, B. Heyde, S. Cygan, M. Sermesant, H. Delingette, O. Bernard, D. Craene, J. D'Hooge.

Elastic registration vs. block matching for quantification of cardiac function with 3D ultrasound: Initial results of a direct comparison in silico based on a new evaluation pipeline, in: IEEE International Ultrasonics Symposium, Chicago, United States, September 2014, pp. 608 - 611. [ DOI : 10.1109/ULTSYM.2014.0149 ]

https://hal.inria.fr/hal-01095790
13R. Cabrera Lozoya, J. Margeta, L. Le Folgoc, Y. Komatsu, B. Benjamin, J. Relan, H. Cochet, M. Haissaguerre, P. Jais, N. Ayache, M. Sermesant.

Confidence-based Training for Clinical Data Uncertainty in Image-based Prediction of Cardiac Ablation Targets, in: bigMCV Workshop MICCAI 2014, Boston, United States, September 2014.

https://hal.inria.fr/hal-01069085
14M. De Craene, M. Alessandrini, P. Allain, S. Marchesseau, I. Waechter-Stehle, J. Weese, E. Saloux, H. G. Morales, R. Cuingnet, H. Delingette, M. Sermesant, O. Bernard, J. D 'hooge.

Generation of ultra-realistic synthetic echocardiographic sequences, in: IEEE 11th International Symposium on Biomedical Imaging (ISBI), Beijing, China, IEEE, April 2014, pp. 73 - 76. [ DOI : 10.1109/ISBI.2014.6867812 ]

https://hal.inria.fr/hal-01095133
15S. Giffard-Roisin, S. Marchesseau, L. Le Folgoc, H. Delingette, M. Sermesant.

Evaluation of Personalised Canine Electromechanical Models, in: Proceedings of the 5th international STACOM workshop, Boston, United States, O. Camara, T. Mansi, M. Pop, K. Rhode, M. Sermesant, A. Young (editors), Springer, September 2014, n^o 8896.

https://hal.inria.fr/hal-01087841
16P. Gori, O. Colliot, L. Marrakchi-Kacem, Y. Worbe, F. De Vico Fallani, M. Chavez, S. Lecomte, C. Poupon, A. Hartmann, N. Ayache, S. Durrleman.

A Prototype Representation to Approximate White Matter Bundles with Weighted Currents, in: MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Boston, United States, September 2014.

https://hal.inria.fr/hal-01010702
17B. Khanal, M. Lorenzi, N. Ayache, X. Pennec.

A Biophysical Model of Shape Changes due to Atrophy in the Brain with Alzheimer's Disease, in: MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, Boston, United States, P. Golland, N. Hata, C. Barillot, J. Hornegger, R. Howe (editors), LNCS - Lecture Notes in Computer Science, Springer, Springer, September 2014, vol. 8674, pp. 41-48. [ DOI : 10.1007/978-3-319-10470-6_6 ]

https://hal.inria.fr/hal-01006478
18M. Kohandani Tafreshi, N. Linard, B. André, N. Ayache, T. Vercauteren.

Semi-automated Query Construction for Content-based Endomicroscopy Video Retrieval, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), Boston, United States, September 2014.

https://hal.inria.fr/hal-01010673
19M. Kohandani Tafreshi, B. Napoléon, A.-I. Lemaistre, M. Giovannini, V. Joshi, J. Dauguet, N. Ayache, B. André.

Smart Atlas for Supporting the Interpretation of needle-based Confocal Laser Endomicroscopy (nCLE) of Pancreatic Cysts: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.

https://hal.inria.fr/hal-01010701
20L. Le Folgoc, H. Delingette, A. Criminisi, N. Ayache.

Sparse Bayesian Registration, in: MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Boston, United States, September 2014. [ DOI : 10.1007/978-3-319-10404-1_30 ]

https://hal.inria.fr/hal-01006605
21H. Lombaert, D. Zikic, A. Criminisi, N. Ayache.

Laplacian Forests: Semantic Image Segmentation by Guided Bagging, in: MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, Boston, United States, P. Golland, N. Hata, C. Barillot, J. Hornegger, R. Howe (editors), LNCS - Lecture Notes in Computer Science, Springer, September 2014, vol. 8674. [ DOI : 10.1007/978-3-319-10470-6_62 ]

https://hal.inria.fr/hal-01009672
22M. Lê, H. Delingette, J. Kalpathy-Cramer, E. Gerstner, H. A. Shih, T. Batchelor, J. Unkelbach, N. Ayache.

Multimodal Analysis of Vasogenic Edema in Glioblastoma Patients for Radiotherapy Planning, in: Workshop Image-Guided Adaptive Radiation Therapy, Boston, United States, September 2014.

https://hal.inria.fr/hal-01093397
23J. Margeta, A. Criminisi, D. C. Lee, N. Ayache.

Recognizing cardiac magnetic resonance acquisition planes, in: MIUA - Medical Image Understanding and Analysis Conference - 2014, London, United Kingdom, Reyes-Aldasoro, Constantino Carlos and Slabaugh, Gregory, July 2014.

https://hal.inria.fr/hal-01009952
24N. Miolane, X. Pennec.

Statistics on Lie groups : a need to go beyond the pseudo-Riemannian framework, in: MaxEnt 2014, Amboise, France, September 2014.

https://hal.inria.fr/hal-01091515
25H. Talbot, F. Spadoni, C. Duriez, M. Sermesant, S. Cotin, H. Delingette.

Interactive Training System for Interventional Electrocardiology Procedures, in: 6th International Symposium on Biomedical Simulation - ISBMS 2014, Strabsourg, France, October 2014, pp. 11 - 19. [ DOI : 10.1007/978-3-319-12057-7_2 ]

https://hal.inria.fr/hal-01078209

National Conferences with Proceedings

26H. Darmanté, B. Bugnas, R. B. D. Dompsure, L. Barresi, N. Miolane, X. Pennec, F. De Paretti, N. Bronsard.

Analyse biométrique de l’anneau pelvien en 3 dimensions – à propos de 100 scanners, in: 89e Réunion annuelle de la SOFCOT, Paris, France, Revue de Chirurgie Orthopédique et Traumatologique, November 2014, vol. 100, n^o 7. [ DOI : 10.1016/j.rcot.2014.09.076 ]

https://hal.inria.fr/hal-01094711

Conferences without Proceedings

27M. Kohandani Tafreshi, V. Joshi, A. Meining, C. Lightdale, M. Giovannini, J. Dauguet, N. Ayache, B. André.

Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Biliary Strictures: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.

https://hal.inria.fr/hal-01010765
28M. Kohandani Tafreshi, Y.-Q. Li, R. Pittayanon, D. Pleskow, V. Joshi, P. Chiu, J. Dauguet, N. Ayache, B. André.

Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Gastric Lesions: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.

https://hal.inria.fr/hal-01010762

Scientific Books (or Scientific Book chapters)

29Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Lecture notes in computer science, Springer International Publishing, Cambridge, United States, January 2015, vol. 8682, 89 p. [ DOI : 10.1007/978-3-319-14905-9 ]

https://hal.inria.fr/hal-01114150
30A. Frangi, D. Friboulet, N. Ayache, H. Delingette, T. Glatard, C. Hoogendoorn, L. Humbert, K. Lekadir, I. Larrabide, Y. Martelli, F. Peyrin, X. Planes, M. Sermesant, M. Villa-Uriol, T. Whitmarsh, D. Atkinson.

Image Based Modelling, in: Computational Biomedicine, P. Coveney, V. Diaz, P. Hunter, M. Viceconti (editors), Oxford University Press, 2014, pp. 59 - 82.

https://hal.archives-ouvertes.fr/hal-01016455
31M. Lorenzi, X. Pennec.

Discrete Ladders for Parallel Transport in Transformation Groups with an Affine Connection Structure, in: Geometric Theory of Information, F. Nielsen (editor), Signals and Communication Technology, Springer, 2014, pp. 243-271. [ DOI : 10.1007/978-3-319-05317-2_9 ]

https://hal.inria.fr/hal-00933229
32X. Pennec, P. Fillard.

Statistical Computing On Non-Linear Spaces For Computational Anatomy, in: Handbook of Biomedical Imaging: Methodologies and Clinical Research, N. Paragios, J. Duncan, N. Ayache (editors), Springer, 2014, forthcoming.

https://hal.inria.fr/inria-00616201

Books or Proceedings Editing

33S. Durrleman, T. Fletcher, G. Gerig, M. Niethammer, X. Pennec (editors)

Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Lecture Notes in Computer Science, Springer, United States, 2015, vol. 8682.

https://hal.inria.fr/hal-01108202
34N. Paragios, J. Duncan, N. Ayache (editors)

Handbook of Biomedical Imaging: Methodologies and Clinical Research, Springer, 2014, 590 p.

https://hal.inria.fr/inria-00616178

Internal Reports

35M. Bauer, M. Bruveris, P. Harms, B. Khesin, S. Marsland, P. Michor, K. Modin, O. Müller, X. Pennec, S. Sommer, F.-X. Vialard.

Math in the Cabin - Shape Analysis Workshop in Bad Gastein, Brunel University London ; University of Vienna, July 2014.

https://hal.archives-ouvertes.fr/hal-01076953

Other Publications

36L. Le Folgoc, H. Delingette, A. Criminisi, N. Ayache.

Technical Appendix on Sparse Bayesian Regression, September 2014, MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Technical appendix to a MICCAI 2014 conference paper. Loïc Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache: Sparse Bayesian Registration.

https://hal.inria.fr/hal-01002861
37C. Vandersteen, T. Demarcy, H. Delingette, C. Raffaelli, J. Laudanski, T. Pourcher, J. Darcourt, P. Franken, D. Gnansia, N. Ayache, N. Guevara.

Teaching tool for advanced visualization of temporal bone structures by fusion of μCT and CT scan images, October 2014, 8th International Symposium on Objective Measures in Auditory Implants. [ DOI : 10.13140/2.1.1517.6007 ]

https://hal.inria.fr/hal-01108877
38A. S. Vemuri, A. Sportes, S. A. Nicolau, J. Marescaux, N. Ayache, L. Soler.

Video Synchronization: An Approach to Biopsy Site Re-localization, December 2014, 1. Introduction2. Related work3. System setup4. Evaluation.

https://hal.inria.fr/hal-01089196

References in notes

39N. Ayache, J. Duncan (editors)

Medical Image Analysis, Elsevier.
40M. Gazzaniga (editor)

The Cognitive Neurosciences, MIT Press, 1995.
41International Symposium on Biomedical Imaging: From Nano to Macro, IEEE, Rotterdam, 2010.
42T. Jiang, N. Navab, J. P. Pluim, M. A. Viergever (editors)

Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), Part I, Lecture Notes in Computer Science, Springer, Beijing, China, September 2010, vol. 6361.
43T. Jiang, N. Navab, J. P. Pluim, M. A. Viergever (editors)

Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), Part II, Lecture Notes in Computer Science, Springer, Beijing, China, September 2010, vol. 6362.
44R. H. Taylor, S. Lavallée, G. S. Burdea, R. Mösges (editors)

Computer-Integrated Surgery: Technology and Clinical Applications, MIT Press, 1995.
45W. Vannier, M. A. Viergever (editors)

Transactions on Medical Imaging, IEEE.
46S. Webb (editor)

The Physics of Medical Imaging, Institute of Physics Publishing, 1988.
47The international journal of Medical Robotics + Computer Assisted Surgery, Wiley.
48R. Acharya, R. Wasserman, J. Stevens, C. Hinojosa.

Biomedical Imaging modalities: a tutorial, in: Computerized Medical Imaging and Graphics, 1995, vol. 19, n^o 1, pp. 3–25.
49M. J. Ackerman.

The Visible Human Project, in: Proceedings of the IEEE : Special Issue on Surgery Simulation, March 1998, vol. 86, n^o 3, pp. 504–511.
50L. Axel, A. Montillo, D. Kim.

Tagged magnetic resonance imaging of the heart: a survey, in: Medical Image Analysis, 2005, vol. 9, n^o 4, pp. 376–393.
51N. Ayache.

L'analyse automatique des images médicales, état de l'art et perspectives, in: Annales de l'Institut Pasteur, avril–juin 1998, vol. 9, n^o 1, pp. 13–21, numéro spécial sur les progrès récents de l'imagerie médicale.
52N. Ayache, O. Clatz, H. Delingette, G. Malandain, X. Pennec, M. Sermesant.

Asclepios: a Research Project-Team at Inria for the Analysis and Simulation of Biomedical Images, in: From semantics to computer science: essays in honor of Gilles Kahn, Y. Bertot, G. Huet, J.-J. Lévy, G. Plotkin (editors), Cambridge University Press, 2009.

http://www.inria.fr/sophia/asclepios/Publications/Nicholas.Ayache/Colloquium-Gilles-Kahn-NA-2007-v5.pdf
53M. Belik, T. Usyk, A. McCulloch.

Computational Methods for Cardiac Electrophysiology, in: Computational Models for the Human Body, N. Ayache (editor), Elsevier, 2004, pp. 129–187.
54H. Delingette, X. Pennec, L. Soler, J. Marescaux, N. Ayache.

Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions, in: Proceedings of the IEEE, September 2006, vol. 94, n^o 9, pp. 1678- 1688.

http://www.inria.fr/sophia/asclepios/Publications/Herve.Delingette/IEEE-proceedings-Robotics.pdf
55I. L. Dryden, K. V. Mardia.

Statistical Shape Analysis, John Wiley and Sons, 1998.
56J. Duncan, N. Ayache.

Medical Image Analysis: Progress over two decades and the challenges ahead, in: IEEE Transactions on Pattern Analysis and Machine Intelligence, 2000, vol. 22, n^o 1, pp. 85–106.
57N. C. Fox, J. M. Schott.

Imaging cerebral atrophy: normal ageing to Alzheimer's disease, in: Lancet, 2004, vol. 363, n^o 9406.
58A. F. Frangi, W. J. Niessen, M. A. Viergever.

Three-dimensional modeling for functional analysis of cardiac images: a review, in: IEEE Trans Med Imaging, January 2001, vol. 20, n^o 1, pp. 2-25.
59P. C. Franzone, L. Guerri, M. Pennachio, B. Taccardi.

Spread of excitation in 3-D models of the anisotropic cardiac tissue, in: Mathematical Biosciences, 1988, vol. 151, pp. 51–98.
60E. Haug, H.-Y. Choi, S. Robin, M. Beaugonin.

Human Models for crash and impact Simulation, in: Computational Models for the Human Body, N. Ayache (editor), Elsevier, 2004, pp. 231–452.
61P. Hunter, T. Borg.

Integration from proteins to organs: the Physiome project, in: Nature Reviews - Molecular Cell Biology, 2003, vol. 4, pp. 237–243.
62P. Hunter.

Computational Physiology and the Physiome Project, 2004.
63D. Metaxas, J. Kayes, F. Primanio.

A 3-D virtual environment for modeling mechanical cardiopulmonary interactions, in: Medical Image Analysis, 1997, vol. 3, n^o 1, pp. 1–26.
64M. I. Miller.

Computational anatomy: shape, growth, and atrophy comparison via diffeomorphisms, in: NeuroImage, 2004, vol. 23, n^o Supplement 1, S19 p, Special Issue : Mathematics in Brain Imaging.
65D. Noble.

Modeling the Heart, from genes to cells to the whole organ, in: Science, 2002, vol. 295, pp. 1678–1682.
66A. Quarteroni, L. Formaggia.

Mathematical Modeling and Numerical Simulation of the Cardiovascular System, in: Computational Models for the Human Body, N. Ayache (editor), Elsevier, 2004, pp. 3–128.
67P. M. Thompson, K. Hayashi, E. Sowell, N. Gogtay, J. Giedd, J. Rapoport, G. de Zubicaray, A. Janke, S. Rose, J. Semple, D. Doddrell, Y. Wang, T. van Erp, T. Cannon, A. W. Toga.

Mapping Cortical Change in Alzheimer's Disease, Brain Development, and Schizophrenia, in: NeuroImage, 2004, vol. 23, n^o supplement 1, S2 p, Special Issue : Mathematics in Brain Imaging.
68P. M. Thompson, M. I. Miller, J. T. Ratnanather, R. A. Poldrack, T. E. Nichols.

Guest Editorial, in: NeuroImage, 2004, vol. 23, n^o Supplement 1, S1 p, Special Issue : Mathematics in Brain Imaging.
69D. W. Thompson.

On Growth and Form, Cambridge Univ. Pr., 1917.
70K. Van Leemput, F. Maes, D. Vandermeulen, P. Suetens.

A unifying framework for partial volume segmentation of brain MR images, in: IEEE Trans Med Imaging, January 2003, vol. 22, n^o 1, pp. 105-19.

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