Bibliography

Major publications by the team in recent years

1C. Ciofolo, C. Barillot.

Atlas-based segmentation of 3D cerebral structures with competitive level sets and fuzzy control, in: Medical Image Analysis, 2009, vol. 13, n^o 3, pp. 456–470.
2O. Commowick, A. Akhondi-Asl, K. Warfield.

Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE, in: IEEE Transactions on Medical Imaging, August 2012, vol. 31, n^o 8, pp. 1593-1606. [ DOI : 10.1109/TMI.2012.2197406 ]

http://www.hal.inserm.fr/inserm-00697775
3P. Coupé, P. Hellier, C. Kervrann, C. Barillot.

NonLocal Means-based Speckle Filtering for Ultrasound Images, in: IEEE Transactions on Image Processing, 2009.
4P. Coupé, P. Yger, S. Prima, P. Hellier, C. Kervrann, C. Barillot.

An Optimized Blockwise Non Local Means Denoising Filter for 3D Magnetic Resonance Images, in: IEEE Transactions on Medical Imaging, April 2008, vol. 27, n^o 4, pp. 425-441.

http://hal.inria.fr/inria-00332014/en/
5A. Crimi, O. Commowick, A. Maarouf, J.-C. Ferré, E. Bannier, A. Tourbah, I. Berry, J.-P. Ranjeva, G. Edan, C. Barillot.

Predictive Value of Imaging Markers at Multiple Sclerosis Disease Onset Based on Gadolinium- and USPIO-Enhanced MRI and Machine Learning., in: PLoS ONE, 2014, vol. 9, n^o 4, e93024. [ DOI : 10.1371/journal.pone.0093024 ]

https://hal.inria.fr/hal-00971524
6D. García-Lorenzo, S. Prima, L. Arnold, D. Collins, C. Barillot.

Trimmed-likelihood estimation for focal lesions and tissue segmentation in multisequence MRI for multiple sclerosis, in: IEEE Transactions on Medical Imaging, August 2011, vol. 30, n^o 8, pp. 1455-67. [ DOI : 10.1109/TMI.2011.2114671 ]

http://www.hal.inserm.fr/inserm-00590724
7C. D. Guibert, C. Maumet, P. Jannin, J.-C. Ferré, C. Tréguier, C. Barillot, E. L. Rumeur, C. Allaire, A. Biraben.

Abnormal functional lateralization and activity of language brain areas in typical specific language impairment (developmental dysphasia), in: Brain, 2011, vol. 134, n^o Pt 10, pp. 3044-3058.
8C. Maumet, P. Maurel, J.-C. Ferré, B. Carsin, C. Barillot.

Patient-specific detection of perfusion abnormalities combining within-subject and between-subject variances in Arterial Spin Labeling, in: NeuroImage, May 2013, vol. 81C, pp. 121-130. [ DOI : 10.1016/j.neuroimage.2013.04.079 ]

http://www.hal.inserm.fr/inserm-00816852
9J. Petr, J.-C. Ferré, H. Raoult, E. Bannier, J.-Y. Gauvrit, C. Barillot.

Template-based approach for detecting motor task activation-related hyperperfusion in pulsed ASL data, in: Human Brain Mapping, March 2014, pp. 1179-89. [ DOI : 10.1002/hbm.22243 ]

http://www.hal.inserm.fr/inserm-00800899
10H. Raoult, E. Bannier, P. Maurel, C. Neyton, J.-C. Ferré, P. Schmitt, C. Barillot, J.-Y. Gauvrit.

Hemodynamic Quantification in Brain Arteriovenous Malformations With Time-Resolved Spin-Labeled Magnetic Resonance Angiography, in: Stroke, July 2014, vol. 45, n^o 8, pp. 2461-4. [ DOI : 10.1161/STROKEAHA.114.006080 ]

http://www.hal.inserm.fr/inserm-01080106

Publications of the year

Articles in International Peer-Reviewed Journals

11S. Amet, V. Launay-Vacher, O. Clément, C. Frances, A. Tricotel, B. Stengel, J.-Y. Gauvrit, N. Grenier, G. Reinhardt, N. Janus, G. Choukroun, M. Laville, G. Deray.

Incidence of nephrogenic systemic fibrosis in patients undergoing dialysis after contrast-enhanced magnetic resonance imaging with gadolinium-based contrast agents: the Prospective Fibrose Nephrogénique Systémique study, in: Investigative Radiology, January 2014, vol. 49, n^o 2, pp. 109-15. [ DOI : 10.1097/RLI.0000000000000000 ]

http://www.hal.inserm.fr/inserm-01102645
12A. Ascherio, K. L. Munger, R. White, K. Köchert, K. C. Simon, H. Polman, M. S. Freedman, H.-P. Hartung, D. H. Miller, X. Montalbán, G. Edan, F. Barkhof, D. Pleimes, E.-W. Radü, R. Sandbrink, L. Kappos, C. Pohl.

Vitamin D as an early predictor of multiple sclerosis activity and progression, in: JAMA Neurology, February 2014, pp. 306-14.

http://www.hal.inserm.fr/inserm-01103094
13A. Crimi, O. Commowick, A. Maarouf, J.-C. Ferré, E. Bannier, A. Tourbah, I. Berry, J.-P. Ranjeva, G. Edan, C. Barillot.

Predictive Value of Imaging Markers at Multiple Sclerosis Disease Onset Based on Gadolinium- and USPIO-Enhanced MRI and Machine Learning, in: PLoS ONE, 2014, vol. 9, n^o 4, e93024. [ DOI : 10.1371/journal.pone.0093024 ]

https://hal.inria.fr/hal-00971524
14R. Devy, P. Lehert, E. Varlan, M. Genty, G. Edan.

Improving the quality of life of multiple sclerosis patients through coping strategies in routine medical practice, in: Journal of Pediatric Neurology, December 2014, pp. 85-90.

http://www.hal.inserm.fr/inserm-01103102
15A. Kerbrat, S. Hamonic, E. Leray, I. Tron, G. Edan, J. Yaouanq.

Ten-year prognosis in multiple sclerosis: a better outcome in relapsing-remitting patients but not in primary progressive patients, in: European Journal of Neurology, December 2014, 8 p.

http://www.hal.inserm.fr/inserm-01103117
16B. Lubicz, J. Klisch, J.-Y. Gauvrit, I. Szikora, M. Leonardi, T. Liebig, N. P. Nuzzi, E. Boccardi, F. D. Paola, M. Holtmannspötter, E. Calgliari, V. Sychra, B. Mine, L. Pierot, W. Weber.

WEB-DL endovascular treatment of wide-neck bifurcation aneurysms: short- and midterm results in a European study, in: American Journal of Neuroradiology, February 2014, vol. 35, n^o 3, pp. 432-8. [ DOI : 10.3174/ajnr.A3869 ]

http://www.hal.inserm.fr/inserm-01102766
17E. Magro, B. Sénécail, J.-C. Gentric, Z. Alavi, O. Palombi, R. Seizeur.

Contribution of embryology in the understanding of cervical venous system anatomy within and around the transverse foramen: a review of the classical literature, in: Surgical and Radiologic Anatomy, July 2014, vol. 36, n^o 5, pp. 411-418. [ DOI : 10.1007/s00276-013-1206-1 ]

http://hal.univ-brest.fr/hal-01026435
18C. Maumet, P. Maurel, J.-C. Ferré, C. Barillot.

Robust estimation of the cerebral blood flow in arterial spin labelling, in: Magnetic Resonance Imaging, June 2014, vol. 32, n^o 5, pp. 497 - 504. [ DOI : 10.1016/j.mri.2014.01.016 ]

http://www.hal.inserm.fr/inserm-00942814
19L. Michel, A. Salmon, C. Malrain, G. Mineur, J.-Y. Gauvrit, P. Sauleau, X. Morandi, M. Vérin, G. Edan, S. Drapier.

An unusual cause of acute paraplegia in a 16-year-old dancer, in: Journal of Pediatric Neurology, May 2014, pp. 1210-2. [ DOI : 10.1007/s00415-014-7320-0 ]

http://www.hal.inserm.fr/inserm-01102660
20J. A. Nagtegaal, C. Pohl, P. Wattjes, E. Hulst, S. Freedman, H.-P. Hartung, D. Miller, X. Montalbán, L. Kappos, G. Edan, D. Pleimes, K. Beckman, B. Stemper, H. Polman, R. Sandbrink, F. Barkhof.

Interferon beta-1b reduces black holes in a randomised trial of clinically isolated syndrome, in: Mult Scler, January 2014, vol. 20, n^o 2, pp. 234-42, Trial registration number : NCT00544037.

http://www.hal.inserm.fr/inserm-01103080
21C. Papagiannaki, L. Spelle, A.-C. Januel, A. Benaissa, J.-Y. Gauvrit, V. Costalat, H. Desal, F. Turjman, S. Velasco, X. Barreau, P. Courtheoux, C. Cognard, D. Herbreteau, J. Moret, L. Pierot.

WEB intrasaccular flow disruptor-prospective, multicenter experience in 83 patients with 85 aneurysms, in: American Journal of Neuroradiology, August 2014, pp. 2106-11. [ DOI : 10.3174/ajnr.A4028 ]

http://www.hal.inserm.fr/inserm-01102684
22J. Petr, J.-C. Ferré, H. Raoult, E. Bannier, J.-Y. Gauvrit, C. Barillot.

Template-based approach for detecting motor task activation-related hyperperfusion in pulsed ASL data, in: Human Brain Mapping, March 2014, pp. 1179-89. [ DOI : 10.1002/hbm.22243 ]

http://www.hal.inserm.fr/inserm-00800899
23H. Raoult, E. Bannier, P. Maurel, C. Neyton, J.-C. Ferré, P. Schmitt, C. Barillot, J.-Y. Gauvrit.

Hemodynamic Quantification in Brain Arteriovenous Malformations With Time-Resolved Spin-Labeled Magnetic Resonance Angiography, in: Stroke, July 2014, vol. 45, n^o 8, pp. 2461-4. [ DOI : 10.1161/STROKEAHA.114.006080 ]

http://www.hal.inserm.fr/inserm-01080106
24M. Taquet, B. Scherrer, O. Commowick, J. Peters, M. Sahin, B. Macq, K. Warfield.

A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure, in: IEEE Transactions on Medical Imaging, February 2014, vol. 33, n^o 2, pp. 504-517. [ DOI : 10.1109/TMI.2013.2289381 ]

http://www.hal.inserm.fr/inserm-00903679

International Conferences with Proceedings

25E. Bannier, A. Coum, A. Boulic, G. Gambarota, Y. Gandon.

Liver biopsy, MRS and MRI fat fraction quantification in patients presenting fat and iron overload, in: ISMRM/ESMRMB, Milano, Italy, May 2014.

http://www.hal.inserm.fr/inserm-01080262
26F. Cao, O. Commowick, E. Bannier, C. Barillot.

Simultaneous Estimation of T1, T2 and B1 Maps From Relaxometry MR Sequences, in: MICCAI Workshop on Intelligent Imaging Linking MR Acquisition and Processing, United States, September 2014, pp. 16-23.

http://www.hal.inserm.fr/inserm-01052853
27F. Cao, O. Commowick, C. Maumet, C. Barillot.

Quantitative Relaxation Templates for the Human Brain at 3T, in: IEEE International Symposium on Biomedical Imaging, China, April 2014, pp. 57-60.

http://www.hal.inserm.fr/inserm-00950843
28H. Deshpande, P. Maurel, C. Barillot.

Detection of Multiple Sclerosis Lesions using Sparse Representations and Dictionary Learning, in: MICCAI - 2nd International Workshop on Sparsity Techniques in Medical Imaging (STMI), Boston, MA, United States, September 2014, n^o 71-79.

https://hal.inria.fr/hal-01087339
29Y. Karpate, O. Commowick, C. Barillot, G. Edan.

Longitudinal Intensity Normalization in Multiple Sclerosis Patients, in: MICCAI Workshop on Clinical Image-based Procedures, Boston, United States, September 2014, pp. 1-8.

http://www.hal.inserm.fr/inserm-01074699
30A. Stamm, O. Commowick, P. Pérez, C. Barillot.

Fast Identification of Optimal Fascicle Configurations from Standard Clinical Diffusion MRI Using Akaike Information Criterion, in: IEEE International Symposium on Biomedical Imaging, China, April 2014, pp. 238-241.

http://www.hal.inserm.fr/inserm-00987802
31A. Stamm, O. Commowick, X. Tomas-Fernandez, J. Singh, K. Warfield.

Tracking the Cortico-Spinal Tract as a Multi-Modal Distribution of Streamlines from Local White Matter Microstructure Models, in: MICCAI Challenge on DTI Tractography Proceedings, United States, September 2014, pp. 21-32.

http://www.hal.inserm.fr/inserm-01066812
32A. Stamm, B. Scherrer, S. Baraldo, O. Commowick, K. Warfield.

Non-central chi estimation of multi-compartment models improves model selection by reducing overfitting, in: ISMRM, Italy, May 2014, 2623 p.

http://www.hal.inserm.fr/inserm-00993964
33A. Stamm, B. Scherrer, O. Commowick, C. Barillot, K. Warfield.

Fast and robust detection of the optimal number of fascicles in diffusion images using model averaging theory, in: ISMRM, Italy, May 2014, 2629 p.

http://www.hal.inserm.fr/inserm-00993965

National Conferences with Proceedings

34C. Barillot, Y. Karpate, A. Crimi, O. Commowick.

Analyse d'images spatio-temporelles dans la Sclérose en Plaques, in: Reconnaissance de Formes et Intelligence Artificielle (RFIA) 2014, Rouen, France, June 2014.

https://hal.archives-ouvertes.fr/hal-00988875

References in notes

35B. Combès, S. Prima.

A new efficient EM-ICP algorithm for non-linear registration of 3D point sets, Inria, January 2012, n^o RR-7853.

http://hal.inria.fr/hal-00656388

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