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ARAMIS - 2015
ARAMIS - 2015
Project-Team Aramis
Members
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
Project-Team Aramis
Members
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography


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Bibliography

Publications of the year

Articles in International Peer-Reviewed Journals

  • 1L. G. Abud, L. Thivard, T. G. Abud, G. S. Nakiri, A. C. Dos Santos, D. Dormont.

    Partial epilepsy: A pictorial review of 3 TESLA magnetic resonance imaging features, in: Clinics (São Paulo, Brazil), August 2015, vol. 70, no 9, pp. 654-61. [ DOI : 10.6061/clinics/2015(09)10 ]

    https://hal.inria.fr/hal-01251490
  • 2S. Allassonnière, S. Durrleman, E. Kuhn.

    Bayesian Mixed Effect Atlas Estimation with a Diffeomorphic Deformation Model, in: SIAM Journal of Imaging Sciences, July 2015, vol. 8, no 3, 29 p. [ DOI : 10.1137/140971762 ]

    https://hal.inria.fr/hal-01246570
  • 3F. Ameur, O. Colliot, P. Caroppo, S. Stroer, D. Dormont, A. Brice, C. Azuar, B. Dubois, I. Le Ber, A. Bertrand.

    White matter lesions in FTLD: distinct phenotypes characterize GRN and C9ORF72 mutations, in: Neurology: Genetics, 2016, vol. 2, no 1. [ DOI : 10.1212/NXG.0000000000000047 ]

    https://hal.inria.fr/hal-01266596
  • 4A. Bertrand, C. Vignal, F. Lafitte, P. Koskas, O. Bergès, F. Héran.

    Open-angle glaucoma and paraoptic cyst: first description of a series of 11 patients, in: AJNR. American journal of neuroradiology, March 2015, vol. 36, no 4, pp. 779-82.

    https://hal.inria.fr/hal-01252635
  • 5E. E. Bron, M. Smits, W. M. van der Flier, H. Vrenken, F. Barkhof, P. Scheltens, J. M. Papma, R. M. E. Steketee, C. Méndez Orellana, R. Meijboom, M. Pinto, J. R. Meireles, C. Garrett, A. J. Bastos-Leite, A. Abdulkadir, O. Ronneberger, N. Amoroso, R. Bellotti, D. Cárdenas-Peña, A. M. Álvarez-Meza, C. V. Dolph, K. M. Iftekharuddin, S. F. Eskildsen, P. Coupé, V. S. Fonov, K. Franke, C. Gaser, C. Ledig, R. Guerrero, T. Tong, K. R. Gray, E. Moradi, J. Tohka, A. Routier, S. Durrleman, A. Sarica, G. Di Fatta, F. Sensi, A. Chincarini, G. M. Smith, Z. V. Stoyanov, L. Sørensen, M. Nielsen, S. Tangaro, P. Inglese, C. Wachinger, M. Reuter, J. C. Van Swieten, W. J. Niessen, S. Klein.

    Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge, in: NeuroImage, May 2015, vol. 111, pp. 562-79. [ DOI : 10.1016/j.neuroimage.2015.01.048 ]

    https://hal.archives-ouvertes.fr/hal-01220123
  • 6P. Caroppo, M.-O. Habert, S. Durrleman, A. Funkiewiez, V. Perlbarg, V. Hahn, H. Bertin, M. Gaubert, A. Routier, D. Hannequin, V. Deramecourt, F. Pasquier, S. Rivaud-Pechoux, M. Vercelletto, G. Edouart, R. Valabregue, P. Lejeune, M. Didic, J.-C. Corvol, H. Benali, S. Lehericy, B. Dubois, O. Colliot, A. Brice, I. Le Ber.

    Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease?, in: Journal of Alzheimer's Disease, August 2015, vol. 47, no 3, pp. 751-9. [ DOI : 10.3233/JAD-150270 ]

    https://hal.inria.fr/hal-01220380
  • 7R. Colle, M. Chupin, C. Cury, C. Vandendrie, F. Gressier, P. Hardy, B. Falissard, O. Colliot, D. Ducreux, E. Corruble.

    Depressed suicide attempters have smaller hippocampus than depressed patients without suicide attempts, in: Journal of Psychiatric Research, February 2015, vol. 61, 6 p. [ DOI : 10.1016/j.jpsychires.2014.12.010 ]

    https://hal.inria.fr/hal-01108928
  • 8C. Cury, J. A. Glaunès, M. Chupin, O. Colliot.

    Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease, in: Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, March 2015, 10 p.

    https://hal.inria.fr/hal-01135304
  • 9C. Cury, R. Toro, F. Cohen, C. Fischer, A. Mhaya, J. Samper-González, D. Hasboun, J.-F. Mangin, T. Banaschewski, A. L. W. Bokde, U. Bromberg, C. Buechel, A. Cattrell, P. Conrod, H. Flor, J. Gallinat, H. Garavan, P. Gowland, A. Heinz, B. Ittermann, H. Lemaitre, J.-L. Martinot, F. Nees, M.-L. Paillère Martinot, D. P. Orfanos, T. Paus, L. Poustka, M. N. Smolka, H. Walter, R. Whelan, V. Frouin, G. Schumann, J. A. Glaunès, O. Colliot.

    Incomplete Hippocampal Inversion: A Comprehensive MRI Study of Over 2000 Subjects, in: Frontiers in Neuroanatomy, December 2015, vol. 9. [ DOI : 10.3389/fnana.2015.00160 ]

    https://hal.inria.fr/hal-01251239
  • 10R. Debs, E. Maillart, R. Fahed, C. Papeix, C. Duyckaerts, C. Stadelmann, D. Galanaud, C. Lubetzki.

    Extensive brain demyelinating lesions under natalizumab: The role of anti-natalizumab antibodies, in: Neurology, November 2015, vol. 85, no 18, pp. 1630-2.

    https://hal.inria.fr/hal-01251509
  • 11P. Dodet, M. Chavez, S. Leu-Semenescu, J.-L. Golmard, I. Arnulf.

    Lucid Dreaming in Narcolepsy, in: SLEEP, March 2015, vol. 38, no 3, pp. 487–497. [ DOI : 10.5665/sleep.4516 ]

    https://hal.archives-ouvertes.fr/hal-01263839
  • 12B. Dubois, M. Chupin, H. Hampel, S. Lista, E. Cavedo, B. Croisile, G. Louis Tisserand, J. Touchon, A. Bonafe, P. J. Ousset, A. Ait Ameur, O. Rouaud, F. Ricolfi, A. Vighetto, F. Pasquier, C. Delmaire, M. Ceccaldi, N. Girard, C. Dufouil, S. Lehericy, I. Tonelli, F. Duveau, O. Colliot, L. Garnero, M. Sarazin, D. Dormont.

    Donepezil decreases annual rate of hippocampal atrophy in suspected prodromal Alzheimer's disease, in: Alzheimer's and Dementia, September 2015, vol. 11, no 9. [ DOI : 10.1016/j.jalz.2014.10.003 ]

    https://hal.inria.fr/hal-01249861
  • 13I. El Karoui, J.-R. King, J. Sitt, F. Meyniel, S. Van Gaal, D. Hasboun, C. Adam, V. Navarro, M. Baulac, S. Dehaene, L. Cohen, L. Naccache.

    Event-Related Potential, Time-frequency, and Functional Connectivity Facets of Local and Global Auditory Novelty Processing: An Intracranial Study in Humans, in: Cerebral Cortex, October 2015, vol. 25, no 11, pp. 4203-12.

    https://hal.inria.fr/hal-01251828
  • 14L. Hamelin, M. Bertoux, M. Bottlaender, H. Corne, J. Lagarde, V. Hahn, J.-F. Mangin, B. Dubois, M. Chupin, L. C. De Souza, O. Colliot, M. Sarazin.

    Sulcal morphology as a new imaging marker for the diagnosis of early onset Alzheimer's disease, in: Neurobiology of Aging, October 2015, vol. 36, no 11, pp. 2932-9. [ DOI : 10.1016/j.neurobiolaging.2015.04.019 ]

    https://hal.inria.fr/hal-01254276
  • 15T. Kaaouana, L. De Rochefort, T. Samaille, N. Thiery, C. Dufouil, C. Delmaire, D. Dormont, M. Chupin.

    2D harmonic filtering of MR phase images in multicenter clinical setting: Toward a magnetic signature of cerebral microbleeds, in: NeuroImage, January 2015, vol. 104, 14 p. [ DOI : 10.1016/j.neuroimage.2014.08.024 ]

    https://hal.inria.fr/hal-01108916
  • 16G. Lancellotti, C. Sagot, A. Forest, S. Greffard, A. Bertrand, M. Verny.

    An Unusual Case of Hemiballism-Hemichorea Associated with Nonketotic Hyperglycemia in Association with a Centrum Semiovale Stroke, in: Journal of the American Geriatrics Society, July 2015, vol. 63, no 8, pp. 1720-1.

    https://hal.inria.fr/hal-01252633
  • 17B. Law-Ye, D. Dormont, J. Chiras, R.-Y. Carlier, F. Clarençon.

    Successful endovascular treatment of three fusiform cerebral aneurysms with the Pipeline Embolization Device in a patient with dilating HIV vasculopathy, in: Journal of neurointerventional surgery, April 2015. [ DOI : 10.1136/neurintsurg-2015-011730 ]

    https://hal.inria.fr/hal-01251495
  • 18E. Magny, C. Sagot, J. Cohen-Bittan, S. Makdessi, A. Bertrand, M. Verny, J. Boddaert.

    Probable Creutzfeldt-Jakob Disease Mimicking a Perioperative Stroke in an Elderly Adult, in: Journal of the American Geriatrics Society, May 2015, vol. 63, no 6, pp. 1268-9.

    https://hal.inria.fr/hal-01252634
  • 19B. Mathon, S. Clemenceau, D. Hasboun, M.-O. Habert, H. Belaid, V.-H. Nguyen-Michel, V. Lambrecq, V. Navarro, S. Dupont, M. Baulac, P. Cornu, C. Adam.

    Safety profile of intracranial electrode implantation for video-EEG recordings in drug-resistant focal epilepsy, in: Journal of Neurology, November 2015, vol. 262, no 12, pp. 2699-712.

    https://hal.inria.fr/hal-01251827
  • 20P. Mesejo, A. Valsecchi, L. Marrakchi-Kacem, S. Cagnoni, S. Damas.

    Biomedical image segmentation using geometric deformable models and metaheuristics, in: Computerized Medical Imaging and Graphics, July 2015, vol. 43, pp. 167-178. [ DOI : 10.1016/j.compmedimag.2013.12.005 ]

    https://hal.inria.fr/hal-01221316
  • 21I. Njeh, L. Sallemi, I. B. Ayed, K. Chtourou, S. Lehericy, D. Galanaud, A. B. Hamida.

    3D multimodal MRI brain glioma tumor and edema segmentation: a graph cut distribution matching approach, in: Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society, February 2015, vol. 40, no 4, pp. 108-19. [ DOI : 10.1016/j.compmedimag.2014.10.009 ]

    https://hal.inria.fr/hal-01251570
  • 22M. Ollivier, E. Wanono, D. Leclercq, F. Domont, S. Trunet, D. Dormont, A. Bertrand.

    Transient reduction in venous susceptibility during posterior reversible encephalopathy syndrome, in: Journal of the Neurological Sciences, November 2015, vol. 358, no 1-2, pp. 505-6. [ DOI : 10.1016/j.jns.2015.09.359 ]

    https://hal.inria.fr/hal-01251489
  • 23T. Simas, M. Chavez, P. R. Rodriguez, A. Diaz-Guilera.

    An algebraic topological method for multimodal brain networks comparisons, in: Frontiers in Psychology, July 2015, vol. 6, 904 p. [ DOI : 10.3389/fpsyg.2015.00904 ]

    https://hal.archives-ouvertes.fr/hal-01263828
  • 24M. Yger, N. Villain, S. Belkacem, A. Bertrand, C. Rosso, S. Crozier, Y. Samson, D. Dormont.

    Contribution of arterial spin labeling to the diagnosis of sudden and transient neurological deficit, in: Revue Neurologique, January 2015, vol. 171, no 2, pp. 161-5. [ DOI : 10.1016/j.neurol.2014.10.014 ]

    https://hal.inria.fr/hal-01251503

Invited Conferences

  • 25F. Deloche, F. De Vico Fallani, S. Allassonniere.

    Innovation-based sparse estimation of functional connectivity from multivariate autoregressive models, in: SPIE, Wavelets and Sparsity XVI, San Diego, United States, August 2015. [ DOI : 10.1117/12.2189640 ]

    https://hal.inria.fr/hal-01260223

International Conferences with Proceedings

  • 26P. Gori, O. Colliot, L. Marrakchi-Kacem, Y. Worbe, A. Routier, C. Poupon, A. Hartmann, N. Ayache, S. Durrleman.

    Joint Morphometry of Fiber Tracts and Gray Matter structures using Double Diffeomorphisms, in: IPMI - Information Processing in Medical Imaging, Isle of Skye, United Kingdom, Lecture Notes in Computer Science, June 2015, vol. 9123, pp. 275-287. [ DOI : 10.1007/978-3-319-19992-4_21 ]

    https://hal.archives-ouvertes.fr/hal-01142628
  • 27B. Gris, S. Durrleman, A. Trouvé.

    A sub-Riemannian modular approach for diffeomorphic deformations, in: 2nd conference on Geometric Science of Information, Paris-Saclay, France, October 2015.

    https://hal.archives-ouvertes.fr/hal-01191540
  • 28Y. Leprince, F. Poupon, T. Delzescaux, D. Hasboun, C. Poupon, D. Rivière.

    Combined Laplacian-equivolumic model for studying cortical lamination with ultra high field MRI (7 T), in: 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), New York, United States, IEEE, April 2015, pp. 580–583. [ DOI : 10.1109/ISBI.2015.7163940 ]

    https://hal-cea.archives-ouvertes.fr/cea-01119475
  • 29X. Navarro, S. Campion, F. De Vico Fallani, P. Pouget, T. Similowski, M. Raux, M. Chavez.

    Steady state visual evoked potentials-based patient interface under breathingconstraints, in: Neural Engineering (NER), 2015 7th International IEEE/EMBS Conference, montpellier, France, 2015. [ DOI : 10.1109/NER.2015.7146579 ]

    https://hal.inria.fr/hal-01207793
  • 30J.-B. Schiratti, S. Allassonniere, O. Colliot, S. Durrleman.

    Learning spatiotemporal trajectories from manifold-valued longitudinal data, in: Neural Information Processing Systems, Montréal, Canada, Advances in Neural Information Processing Systems, December 2015, no 28.

    https://hal.archives-ouvertes.fr/hal-01163373
  • 31J.-B. Schiratti, S. Allassonniere, A. Routier, O. Colliot, S. Durrleman.

    A mixed-effects model with time reparametrization for longitudinal univariate manifold-valued data, in: IPMI - Information Processing in Medical Imaging, Sleat, Isle of Skye, United Kingdom, Information Processing in Medical Imaging, Springer International Publishing, June 2015, vol. Lecture Notes In Computer Science, no 9123, pp. 564-575, http://ipmi2015.cs.ucl.ac.uk/ .

    https://hal.archives-ouvertes.fr/hal-01163213
  • 32J.-B. Schiratti, S. Allassonnière, O. Colliot, S. Durrleman.

    Mixed-effects model for the spatiotemporal analysis of longitudinal manifold-valued data, in: 5th MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Munich, Germany, October 2015.

    https://hal.archives-ouvertes.fr/hal-01245905

Conferences without Proceedings

  • 33M. Chupin, J. Germain, L. Marrakchi-Kacem, E. Gerardin, C. Boutet, C. Cury, A. Vignaud, L. Hertz-Pannier, S. Lehéricy, S. Epelbaum, D. Hasboun, O. Colliot.

    Segmentation of hippocampal inner structure using 7T in-vivo MRI: a robust anatomical protocol, in: Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Honolulu, United States, 2015.

    https://hal.inria.fr/hal-01188838
  • 34C. Cury, J. Glaunés, R. Toro, G. Shumann, V. Frouin, O. Colliot.

    Statistical shape analysis of large datasets using diffeomorphic iterative centroids, in: Human Brain Mapping - 2015, Honolulu, United States, June 2015.

    https://hal.inria.fr/hal-01212226
  • 35C. Cury, R. Toro, F. Cohen, A. Mhaya, D. Hasboun, G. Shumann, V. Frouin, J. A. Glaunès, O. Colliot.

    Characterization of Incomplete Hippocampal Inversions in a large dataset of young healthy subjects, in: Human Brain Mapping - 2015, Honolulu, United States, June 2015.

    https://hal.inria.fr/hal-01212219
  • 36L. Fillon, O. Colliot, D. Hasboun, B. Dubois, D. Dormont, L. Lemieux, M. Chupin.

    Multi-template approaches for segmenting the hippocampus: the case of the SACHA software, in: Organization for Human Brain Mapping (OHBM), Honolulu, United States, June 2015, 5 p.

    https://hal.archives-ouvertes.fr/hal-01188794
  • 37P. Gori, O. Colliot, L. Marrakchi-Kacem, Y. Worbe, A. Routier, C. Poupon, A. Hartmann, N. Ayache, S. Durrleman.

    Unified analysis of shape and structural connectivity of neural pathways, in: Organisation for Human Brain Mapping, Honolulu, Hawaii, United States, 2015.

    https://hal.archives-ouvertes.fr/hal-01187461
  • 38A. B. Graciano Fouquier, E. Bardinet, M.-L. Welter, C. Karachi, J. Yelnik, S. Fernandez Vidal, S. Durrleman.

    Assessment of an iconic-geometric nonlinear registration method for deep brain stimulation (DBS) planning, in: Organization for Human Brain Mapping (OHBM) 2015, Honolulu, Hawaii, United States, June 2015.

    https://hal.inria.fr/hal-01187468
  • 39B. Gris, S. Durrleman, A. Trouvé.

    A modular multi-scale model to build atlases of shapes with large deformations, in: Organization for Human Brain Mapping 2015, Honolulu, United States, June 2015, 1 p.

    https://hal.archives-ouvertes.fr/hal-01191547
  • 40E. Gérardin, J. A. Glaunès, M. Chupin, A. B. Graciano Fouquier, K. Roussel, S. Durrleman, T. R. Henry, P.-F. Van De Moortele, A. Trouvé, O. Colliot.

    Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI, in: Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Honolulu, United States, 2015.

    https://hal.inria.fr/hal-01188833
  • 41L. Marrakchi-Kacem, A. Vignaud, J. Sein, J. Germain, S. Epelbaum, T. R. Henry, P. Cyril, L. Hertz-Pannier, S. Lehéricy, O. Colliot, P.-F. Van De Moortele, M. Chupin.

    Imaging of hippocampal inner structure at 7T: robust in-vivo acquisition protocol, in: Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Honolulu, United States, 2015.

    https://hal.inria.fr/hal-01188843
  • 42A. Routier, M. Prastawa, B. Charlier, C. Doucet, J. A. Glaunès, S. Durrleman.

    Deformetrica: a software for statistical analysis of anatomical shapes, in: 21st Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Honolulu, United States, June 2015.

    https://hal.inria.fr/hal-01187469

Books or Proceedings Editing

  • 43S. Durrleman, T. P. Fletcher, G. Gerig, M. Niethammer, X. Pennec (editors)

    Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Lecture notes in computer science, Springer International Publishing, Cambridge, United States, January 2015, vol. 8682, 89 p. [ DOI : 10.1007/978-3-319-14905-9 ]

    https://hal.inria.fr/hal-01114150
  • 44X. Pennec, S. Joshi, M. Nielsen, T. P. Fletcher, S. Durrleman, S. Sommer (editors)

    Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015), August 2015, 173 p.

    https://hal.inria.fr/hal-01203812

Other Publications

  • 45J.-B. Schiratti, S. Allassonniere, O. Colliot, S. Durrleman.

    Learning spatio-temporal trajectories from manifold-valued longitudinal data, December 2015, Neural Information Processing Systems, Poster.

    https://hal.archives-ouvertes.fr/hal-01245909


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