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Bibliography

Major publications by the team in recent years
  • 1C. Ciofolo, C. Barillot.

    Atlas-based segmentation of 3D cerebral structures with competitive level sets and fuzzy control, in: Medical Image Analysis, 2009, vol. 13, no 3, pp. 456–470.
  • 2O. Commowick, A. Akhondi-Asl, S. K. Warfield.

    Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE, in: IEEE Transactions on Medical Imaging, August 2012, vol. 31, no 8, pp. 1593-1606. [ DOI : 10.1109/TMI.2012.2197406 ]

    http://www.hal.inserm.fr/inserm-00697775
  • 3P. Coupé, P. Hellier, C. Kervrann, C. Barillot.

    NonLocal Means-based Speckle Filtering for Ultrasound Images, in: IEEE Transactions on Image Processing, 2009.
  • 4P. Coupé, P. Yger, S. Prima, P. Hellier, C. Kervrann, C. Barillot.

    An Optimized Blockwise Non Local Means Denoising Filter for 3D Magnetic Resonance Images, in: IEEE Transactions on Medical Imaging, April 2008, vol. 27, no 4, pp. 425-441.

    http://hal.inria.fr/inria-00332014/en/
  • 5A. Crimi, O. Commowick, A. Maarouf, J.-C. Ferré, E. Bannier, A. Tourbah, I. Berry, J.-P. Ranjeva, G. Edan, C. Barillot.

    Predictive Value of Imaging Markers at Multiple Sclerosis Disease Onset Based on Gadolinium- and USPIO-Enhanced MRI and Machine Learning., in: PLoS ONE, 2014, vol. 9, no 4, e93024. [ DOI : 10.1371/journal.pone.0093024 ]

    https://hal.inria.fr/hal-00971524
  • 6D. García-Lorenzo, S. Prima, D. L. Arnold, L. D. Collins, C. Barillot.

    Trimmed-likelihood estimation for focal lesions and tissue segmentation in multisequence MRI for multiple sclerosis, in: IEEE Transactions on Medical Imaging, August 2011, vol. 30, no 8, pp. 1455-67. [ DOI : 10.1109/TMI.2011.2114671 ]

    http://www.hal.inserm.fr/inserm-00590724
  • 7C. D. Guibert, C. Maumet, P. Jannin, J.-C. Ferré, C. Tréguier, C. Barillot, E. L. Rumeur, C. Allaire, A. Biraben.

    Abnormal functional lateralization and activity of language brain areas in typical specific language impairment (developmental dysphasia), in: Brain, 2011, vol. 134, no Pt 10, pp. 3044-3058.
  • 8C. Maumet, P. Maurel, J.-C. Ferré, B. Carsin, C. Barillot.

    Patient-specific detection of perfusion abnormalities combining within-subject and between-subject variances in Arterial Spin Labeling, in: NeuroImage, May 2013, vol. 81C, pp. 121-130. [ DOI : 10.1016/j.neuroimage.2013.04.079 ]

    http://www.hal.inserm.fr/inserm-00816852
  • 9J. Petr, J.-C. Ferré, H. Raoult, E. Bannier, J.-Y. Gauvrit, C. Barillot.

    Template-based approach for detecting motor task activation-related hyperperfusion in pulsed ASL data, in: Human Brain Mapping, March 2014, pp. 1179-89. [ DOI : 10.1002/hbm.22243 ]

    http://www.hal.inserm.fr/inserm-00800899
  • 10H. Raoult, E. Bannier, P. Maurel, C. Neyton, J.-C. Ferré, P. Schmitt, C. Barillot, J.-Y. Gauvrit.

    Hemodynamic Quantification in Brain Arteriovenous Malformations With Time-Resolved Spin-Labeled Magnetic Resonance Angiography, in: Stroke, July 2014, vol. 45, no 8, pp. 2461-4. [ DOI : 10.1161/STROKEAHA.114.006080 ]

    http://www.hal.inserm.fr/inserm-01080106
Publications of the year

Articles in International Peer-Reviewed Journals

  • 11L. Beuzit, P.-A. Eliat, V. Brun, J.-C. Ferré, Y. Gandon, E. Bannier, H. Saint-Jalmes.

    Dynamic contrast-enhanced MRI: Study of inter-software accuracy and reproducibility using simulated and clinical data, in: Journal of magnetic resonance imaging: JMRI, 2015. [ DOI : 10.1002/jmri.25101 ]

    https://hal-univ-rennes1.archives-ouvertes.fr/hal-01255866
  • 12B. Combès, D. Heitz, A. Guibert, E. Mémin.

    A particle filter to reconstruct a free-surface flow from a depth camera, in: Fluid Dynamics Research, October 2015, vol. 47, no 5. [ DOI : 10.1088/0169-5983/47/5/051404 ]

    https://hal.archives-ouvertes.fr/hal-01223693
  • 13O. Commowick, A. Maarouf, J.-C. Ferré, J.-P. Ranjeva, G. Edan, C. Barillot.

    Diffusion MRI abnormalities detection with orientation distribution functions: A multiple sclerosis longitudinal study, in: Medical Image Analysis, May 2015, vol. 22, no 1, pp. 114-123. [ DOI : 10.1016/j.media.2015.02.005 ]

    http://www.hal.inserm.fr/inserm-01134107
  • 14A. Coum, F. Noury, E. Bannier, K. Begriche, B. Fromenty, Y. Gandon, H. Saint-Jalmes, G. Gambarota.

    The effect of water suppression on the hepatic lipid quantification, as assessed by the LCModel, in a preclinical and clinical scenario, in: Magnetic Resonance Materials in Physics, Biology and Medicine, 2015. [ DOI : 10.1007/s10334-015-0508-1 ]

    https://hal-univ-rennes1.archives-ouvertes.fr/hal-01237087
  • 15H. Deshpande, P. Maurel, C. Barillot.

    Classification of Multiple Sclerosis Lesions using Adaptive Dictionary Learning, in: Computerized Medical Imaging and Graphics, August 2015, pp. 1-15. [ DOI : 10.1016/j.compmedimag.2015.05.003 ]

    https://hal.inria.fr/hal-01151695
  • 16A. Kiani, A. Esquevin, N. Lepareur, P. Bourguet, F. Le Jeune, J.-Y. Gauvrit.

    Main applications of hybrid PET-MRI contrast agents: a review, in: Contrast Media & Molecular Imaging, 2015. [ DOI : 10.1002/cmmi.1674 ]

    https://hal-univ-rennes1.archives-ouvertes.fr/hal-01239820
  • 17A. Maarouf, J.-C. Ferré, W. Zaaraoui, A. Le Troter, E. Bannier, I. Berry, M. Guye, L. Pierot, C. Barillot, J. Pelletier, A. Tourbah, G. Edan, B. Audoin, J.-P. Ranjeva.

    Ultra-small superparamagnetic iron oxide enhancement is associated with higher loss of brain tissue structure in clinically isolated syndrome, in: Multiple Sclerosis, October 2015. [ DOI : 10.1177/1352458515607649 ]

    http://www.hal.inserm.fr/inserm-01238926
  • 18S. Pujol, W. Wells, C. Pierpaoli, C. Brun, J. Gee, G. Cheng, B. Vemuri, O. Commowick, S. Prima, A. Stamm, M. Goubran, A. Khan, T. Peters, P. Neher, K. H. Maier-Hein, Y. Shi, A. Tristan-Vega, G. Veni, R. Whitaker, M. Styner, C.-F. Westin, S. Gouttard, I. Norton, L. Chauvin, H. Mamata, G. Gerig, A. Nabavi, A. Golby, R. Kikinis.

    The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery, in: Journal of neuroimaging : official journal of the American Society of Neuroimaging, August 2015, 8 p, In press, available online. [ DOI : 10.1111/jon.12283 ]

    http://www.hal.inserm.fr/inserm-01185878

International Conferences with Proceedings

  • 19E. Bannier, M. Mano, S. Robert, I. Corouge, L. Perronnet, J. Lindgren, A. Lecuyer, C. Barillot.

    On the feasibility and specificity of simultaneous EEG and ASL MRI at 3T, in: Proceedings of ISMRM, Toronto, Canada, May 2015.

    http://www.hal.inserm.fr/inserm-01113276
  • 20C. Barillot, E. Bannier, O. Commowick, I. Corouge, J. Guillaumont, Y. Yao, M. Kain.

    Shanoir: Software as a Service Environment to Manage Population Imaging Research Repositories, in: MICCAI Workshop on MAnagement and Processing of images for Population ImagiNG, Munich, Germany, October 2015, pp. 23-30.

    http://www.hal.inserm.fr/inserm-01244551
  • 21I. Corouge, E. Bannier, E. Le Rumeur, J.-C. Ferré.

    Arterial spin labeling motor activation presurgical mapping for brain tumor resection, in: ESMRMB, Edinburgh, United Kingdom, October 2015, vol. 28, no suppl 1, 176 p.

    http://www.hal.inserm.fr/inserm-01240708
  • 22H. Deshpande, P. Maurel, C. Barillot.

    Adaptive Dictionary Learning For Competitive Classification Of Multiple Sclerosis Lesions, in: International Symposium on BIOMEDICAL IMAGING: From Nano to Macro, New-York, United States, April 2015.

    https://hal.inria.fr/hal-01121110
  • 23R. Hedouin, O. Commowick, A. Stamm, C. Barillot.

    Interpolation and Averaging of Multi-Compartment Model Images, in: 18th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Munich, Germany, October 2015, vol. 9350, pp. 354-362. [ DOI : 10.1007/978-3-319-24571-3_43 ]

    http://www.hal.inserm.fr/inserm-01185733
  • 24R. Hedouin, O. Commowick, M. Taquet, E. Bannier, B. Scherrer, S. K. Warfield, C. Barillot.

    Symmetric Block-Matching Registration for the Distortion Correction of Echo-Planar Images, in: IEEE International Symposium on Biomedical Imaging (ISBI), New York, United States, April 2015, pp. 717-720.

    http://www.hal.inserm.fr/inserm-01118766
  • 25Y. Karpate, O. Commowick, C. Barillot.

    Probabilistic One Class Learning for Automatic Detection of Multiple Sclerosis Lesions, in: IEEE International Symposium on Biomedical Imaging (ISBI), Brooklyn, United States, April 2015, pp. 486-489.

    http://www.hal.inserm.fr/inserm-01127690
  • 26Y. Karpate, O. Commowick, C. Barillot.

    Robust Detection of Multiple Sclerosis Lesions from Intensity-Normalized Multi-Channel MRI, in: SPIE Medical Imaging, Orlando, United States, February 2015.

    http://www.hal.inserm.fr/inserm-01127692
  • 27A. Kiani, E. Bannier, G. Gambarota, H. Saint-Jalmes, G. Yves.

    Evaluation of novel multi echo MRS and MRI sequences for iron and fat overload quantification at 3T in one breath-hold, in: ISMRM, Toronto, Canada, May 2015.

    http://www.hal.inserm.fr/inserm-01113278
  • 28T. Oberlin, C. Barillot, R. Gribonval, P. Maurel.

    Symmetrical EEG-FMRI Imaging by Sparse Regularization, in: EUSIPCO – 23rd European Signal Processing Conference, Nice, France, August 2015, pp. 1-5.

    https://hal.archives-ouvertes.fr/hal-01170889
  • 29L. Soustelle, O. Commowick, E. Bannier, C. Barillot.

    Quantification of Myelin Degeneration in Multiple Sclerosis within Clinical Scan Times, in: ISMRM, Toronto, Canada, May 2015.

    http://www.hal.inserm.fr/inserm-01113277

National Conferences with Proceedings

  • 30E. Bannier, M. Mano, S. Robert, I. Corouge, L. Perronnet, J. Lindgren, A. Lecuyer, C. Barillot.

    Faisabilité et spécificités de l'ASL-EEG simultané à 3T, in: SFRMBM, Grenoble, France, March 2015.

    http://www.hal.inserm.fr/inserm-01113279
  • 31A. Kiani, E. Bannier, G. Gambarota, H. Saint-Jalmes, G. Yves.

    Evaluation de nouvelles séquences d'imagerie et de spectroscopie multiéchos pour la quantification de la surcharge hépatique en fer et en graisse en une seule apnée, in: SFRMBM, Grenoble, France, March 2015.

    http://www.hal.inserm.fr/inserm-01121582
  • 32L. Soustelle, O. Commowick, E. Bannier, C. Barillot.

    Quantification de la fraction d’eau piégée dans la myéline – Faisabilité et évaluation clinique en SEP, in: SFRMBM, Grenoble, France, March 2015.

    http://www.hal.inserm.fr/inserm-01121578

Conferences without Proceedings

  • 33J. Pelletier, J.-P. Ranjeva, A. Tourbah, G. Edan, C. Barillot, S. Le Lamer, B. Audoin, A. Rico, L. Crespy, B. Ridley, W. Zaaraoui, S. Confort-Gouny, M. Guye, A. Maarouf, N. Caucheteux, M.-P. Chaunu, C. Portefaix, L. Pierot, O. Commowick, A. Kerbrat, L. Catanese, V. Cuvier, J. Veys, R. Pruss, W. Hauke.

    Results of a Phase 1b study to confirm safety and tolerability of olesoxime in multiple sclerosis patients, in: American Academy of Neurology, Washington, DC, United States, Neurology, April 2015, vol. 84, no 14 Supplement.

    http://www.hal.inserm.fr/inserm-01244547

Other Publications

  • 34R. Hedouin, O. Commowick, E. Bannier, C. Barillot.

    Symmetric Block-Matching Registration for the Distortion Correction of Echo-Planar Images , October 2015, ESMRMB, Poster.

    http://www.hal.inserm.fr/inserm-01251208
  • 35P.-Y. Jonin, G. Besson, J. Pariente, R. La Joie, S. Belliard, B. Christian, I. Corouge, E. J. Barbeau.

    When the extended hippocampal system is of no need for context-free memory: a case of developmental amnesia, September 2015, Memory Mechanisms in Machine and Man, Poster.

    http://www.hal.inserm.fr/inserm-01246564


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