Section: Dissemination

Teaching - Supervision - Juries

Teaching

• Bachelor: F. Grognard (45.5h ETD) and L. Mailleret (26h ETD), “Equations différentielles ordinaires et systèmes dynamiques”, L3, 1st year Engineering in Modelling and Applied Mathematics, Polytech'Nice, Université of Nice Sophia Antipolis, France.

• Bachelor: N. Bajeux (192h ETD) is ATER at IUT Nice Côte d'Azur of Université of Nice Sophia Antipolis, France.

• Master: F. Grognard (33h ETD) and L. Mailleret (33h ETD), “Bio-Mathématiques”, M1, 2nd year Engineering in Modelling and Applied Mathematics (eq. M1), Polytech'Nice, Université of Nice Sophia Antipolis, France.

• Master: J.-L. Gouzé (9h ETD), M. Chaves (9h ETD), “Discrete and continuous approaches to model gene regulatory networks”, Master of Science in Computational Biology (M2), University of Nice - Sophia Antipolis.

• Master: J.-L. Gouzé (18h ETD), M. Chaves (12h ETD) “Modelling biological networks by ordinary differential equations”, 4th year students, Génie Biologie, Polytech'Nice, University of Nice - Sophia Antipolis.

• Master: O. Bernard (4.5h ETD), “Bioenergy from microalgae”, M2, Master International Energy Management : alternatives pour l'énergie du futur, Ecole Nationale Supérieure des Mines de Paris, France.

• Master: O. Bernard (18h ETD), “Modelling biotechnological processes”, M2, Ecole Centrale de Paris, France.

• Master: S. Touzeau (30.75h ETD), “Analyse de données”, M1, 2nd engineering year in Génie Biologie, Polytech'Nice – Université Nice Sophia Antipolis, France.

• Doctorat: M. Chaves gave courses at the Research School on “Modelling Complex Biological Systems in the Context of Genomics, advances in Systems and Synthetic Biology” (1.5h, Évry, March 2016) and the Summer School on “Modélisation formelle de réseaux de régulation biologique” (3h, Porquerolles, June 2016).

• Doctorat: S. Touzeau (8h), “Mathematical modelling in animal and plant epidemiology”, CIMPA-Cameroun-CETIC research school Mathematical and Computer Models in Epidemiology, Ecology and Agronomy,Yaoundé, Cameroon, September 2016.

O. Bernard together with F. Mairet and Q. Béchet supervised two projects for engineering school students. The first project involved 6 students of Ecole Nationale Supérieure des Mines de Paris (last year of engineering school, 1 week ("Combining photovoltaic panels and microalgae" ) and the second project involved three groups of 4 students from the Ecole Centrale de Paris (first year of engineering school), 4 months, to design a process with microalgae growing on a biofilm.

Supervision

• HDR: F. Mairet, "Control theory applied to microorganism growth: from physiological insights to bioprocess management", December 7th, 2016.

• PhD : C. Combe, "Quantitative and qualitative effects of light on the Growth of microalgae in dense cultures ", May, 9th, 2016, UPMC. Supervisors: A. Sciandra, S. Rabouille and O. Bernard.

• PhD : E. Rousseau, ”Impact of genetic drift and selection on the durability of plant resistance to viruses" ”, May 27th, 2016, Univ. Nice Sophia Antipolis. Supervisors: F. Grognard, L. Mailleret, B. Moury, and F. Fabre (INRA Avignon).

• PhD : G. Grimaud, "Modeling of the effect of temperature on phytoplankton: from acclimation to adaptation", June, 14th, 2016 Univ. Nice Sophia Antipolis. Supervisors: O. Bernard, F. Mairet and S. Rabouille.

• PhD in progress : D. Demory, "Impact of virus dynamics on microalgae mortality ", since September 2013, UPMC. Supervisors: A. Sciandra and O. Bernard.

• PhD in progress : N. Bajeux, "Influence d’une densité dépendance dans les modèles impulsionnels de dynamiques des populations", since October 2013, Univ. Nice Sophia Antipolis. Supervisors: F. Grognard and L. Mailleret.

• PhD in progress : S. Casagranda. “Analysis and control of cell growth models”, since November 2013, Univ. Nice Sophia Antipolis. Supervisors: J.-L. Gouzé and D. Ropers (Inria IBIS).

• PhD in progress : S. Almeida. "Theoretical design of synthetic biological oscillators and their coupling", since October 2014, Univ. Nice Sophia Antipolis. Supervisors: M. Chaves and F. Delaunay (Univ. Nice, iBV).

• PhD in progress : M. Caïa, "Characterization and modelling of a mixotrophic algae - bacteria ecosystem for waste recovery", since September 2015, University Montpellier. Supervisors: J.-P. Steyer and O. Bernard.

• PhD in progress : M. Haond. "Causes et conséquences des fronts de colonisation poussés", since October 2015, Univ. Nice Sophia Antipolis. Supervisors: E. Vercken (UMR ISA), L. Mailleret and L. Roques (UR BioSP).

• PhD in progress : C. Martinez von Dossow . "Modélisation et optimisation de consortia microalgues-bactéries", since February 2016, UPMC. Supervisors: O. Bernard, F. Mairet and A. Sciandra.

• PhD in progress : L. Pereira. "Experimental and computational approaches to understanding the molecular origins of drug response heterogeneity, underlying resistance to cancer therapies", since October 2016, Univ. Nice Sophia Antipolis. Supervisors: M. Chaves and J. Roux (IRCAN, Nice).

• PhD in progress : L. Chambon. “Control of models of genetic regulatory networks”. since October 2016, Univ. Nice Sophia Antipolis. Supervisor J.-L. Gouzé.

• PhD in progress : C. Lopez-Zazueta. “Use of Perturbation Theory to optimize metabolic production of biofuels by microalgae.”, since January 2016, Univ. Nice Sophia Antipolis, supervisors O. Bernard and J.-L. Gouzé.

• PhD in progress: S. Nilusmas, “Gestion durable des nématodes à galles en cultures maraîchères : modélisation et optimisation du déploiement des résistances et des pratiques agronomiques”, since December 2016, Univ. Nice Sophia Antipolis. Supervisors: S. Touzeau, C. Caporalino (ISA), V. Calcagno (ISA), P. Castagnone (ISA) and L. Mailleret.

Master theses and engineering internships supervision

• M1: Ambre Vaisseix, "Effet de la température pour des cultures de microalgues sous serre", Université de Nantes

• M1: Anais Bacquet, "Modélisation métabolique de Chlorella sorokiniana, en condition mixotrophe pour identifier des stratégies optimales de consommation de déchets organiques", Univ. Nice Sophia Antipolis.

• Engineer: Jérome Grenier, "Développement et modélisation d’un système innovant de production de microalguessous forme de biofilm", Ecole Centrale de Paris

• M2: Christina Kozia, "Dynamical representation and analysis of models of genetic regulatory networks", Univ. Nice Sophia Antipolis.

• Engineer: Arthur Péré, "Évaluation in silico de la durabilité de résistances variétales avec interaction entre gènes par une approche de modélisation", INSA Lyon.

• M2: Samuel Nilusmas, "Évolution de la virulence chez un nématode phytoparasite : déploiement optimal et robuste de plantes résistantes", Université Claude Bernard Lyon 1.

Juries

• M. Chaves was reviewer for the PhD defense of Simona Catozzi "Retroactivity in signal transduction: a comparative study of forward and backward responses in signaling cascades", University of Nice Sophia Antipolis, December 15, 2016.

• J.-L. Gouzé was reviewer for the PhD of Hafiz Ahmed “Modeling and synchronization of biological rhythms: from cells to oyster behavior”, University of Lille 1, September 22, 2016.

• J.-L. Gouzé was reviewer for the PhD of Clément Aldebert, “Uncertainty in predictive ecology: consequence of choices in model construction ”, Univ Aix-Marseille, November 29, 2016.

• J.-L. Gouzé was in the jury of the HDR of Francis Mairet, “ Control theory applied to microorganism growth: from physiological insights to bioprocess management ”, University of Nice Sophia Antipolis, December 7, 2016.

• J.-L. Gouzé was in the jury of the PhD of Dominique Lamonica, “Capturer les interactions écologiques en microcosme sous pression chimique à travers le prisme de la modélisation”, Université Claude Bernard Lyon 1,April 8, 2016.

• J.-L. Gouzé was in the jury of the PhD of Elsa Rousseau “Effect of genetic drift and selection on plant resistance durability to viruses”, University of Nice Sophia Antipolis, May 27, 2016. F. Grognard and L. Mailleret were invited members of this jury

• O. Bernard was reviewer for the HDR of S. Tebbani "Contribution à l'étude des systèmes non linéaires incertains : application à la commande de systèmes biotechnologiques ", University of Paris-Sud, November 7th, 2016.

• O. Bernard was reviewer for the PhD thesis of C. E. Robles Rodriguez " Modeling and optimization of bio-lipid production by oleaginous yeasts ", University of Toulouse, October 19th, 2016.

• O. Bernard was in the PhD jury of J. Rumin "Non-GMO improvement of microalgae performances", University of Nantes, March, 16th, 2016.

• O. Bernard was in the PhD jury of G. Grimaud, "Modeling of the effect of temperature on phytoplankton: from acclimation to adaptation", Univ. Nice, June 14th, 2016.

• O. Bernard was in the PhD jury of C. Combe, "Quantitative and qualitative effects of light on the Growth of microalgae in dense cultures ", UPM, May 9th, 2016.

• S. Touzeau is in the thesis committees of David Demory (UPMC, 2013–2016).