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Bibliography

Major publications by the team in recent years
  • 1H. Courtecuisse, J. Allard, K. Pierre, S. P.-A. Bordas, S. Cotin, C. Duriez.

    Real-time simulation of contact and cutting of heterogeneous soft-tissues, in: Medical Image Analysis, February 2014, 20 p.

    https://hal.inria.fr/hal-01097108
  • 2F. Faure, C. Duriez, H. Delingette, J. Allard, B. Gilles, S. Marchesseau, H. Talbot, H. Courtecuisse, G. Bousquet, I. Peterlik, S. Cotin.

    SOFA: A Multi-Model Framework for Interactive Physical Simulation, in: Soft Tissue Biomechanical Modeling for Computer Assisted Surgery, Y. Payan (editor), Studies in Mechanobiology, Tissue Engineering and Biomaterials, Springer, June 2012, vol. 11, pp. 283-321. [ DOI : 10.1007/8415_2012_125 ]

    https://hal.inria.fr/hal-00681539
  • 3N. Haouchine, S. Cotin, I. Peterlik, J. Dequidt, M. Sanz-Lopez, E. Kerrien, M.-O. Berger.

    Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery, in: IEEE Transactions on Visualization and Computer Graphics, 2015, vol. 21, no 5, pp. 584 - 597. [ DOI : 10.1109/TVCG.2014.2377772 ]

    https://hal.inria.fr/hal-01136728
  • 4N. Haouchine, J. Dequidt, M.-O. Berger, S. Cotin.

    Monocular 3D Reconstruction and Augmentation of Elastic Surfaces with Self-occlusion Handling, in: IEEE Transactions on Visualization and Computer Graphics, 2015, 14 p. [ DOI : 10.1109/TVCG.2015.2452905 ]

    https://hal.inria.fr/hal-01186011
  • 5N. Haouchine, J. Dequidt, I. Peterlik, E. Kerrien, M.-O. Berger, S. Cotin.

    Image-guided Simulation of Heterogeneous Tissue Deformation For Augmented Reality during Hepatic Surgery, in: ISMAR - IEEE International Symposium on Mixed and Augmented Reality 2013, Adelaide, Australia, October 2013.

    https://hal.inria.fr/hal-00842855
  • 6I. Peterlík, C. Duriez, S. Cotin.

    Modeling and Real-Time Simulation of a Vascularized Liver Tissue, in: Medical Image Computing and Computer-Assisted Intervention–MICCAI 2012, 2012, pp. 50–57.

    https://hal.archives-ouvertes.fr/hal-00800546
  • 7H. Talbot, N. Haouchine, I. Peterlik, J. Dequidt, C. Duriez, H. Delingette, S. Cotin.

    Surgery Training, Planning and Guidance Using the SOFA Framework, in: Eurographics, Zurich, Switzerland, May 2015.

    https://hal.inria.fr/hal-01160297
  • 8H. Talbot, F. Roy, S. Cotin.

    Augmented Reality for Cryoablation Procedures, in: SIGGRAPH 2015, Los Angeles, United States, August 2015.

    https://hal.inria.fr/hal-01180848
  • 9H. Talbot, F. Spadoni, C. Duriez, M. Sermesant, M. O’Neill, P. Jaïs, S. Cotin, H. Delingette.

    Interactive training system for interventional electrocardiology procedures, in: Medical image analysis, 2017, vol. 35, pp. 225–237.
  • 10L. Untereiner, P. Kraemer, D. Cazier, D. Bechmann.

    CPH: a compact representation for hierarchical meshes generated by primal refinement, in: Computer Graphics Forum, 2015, vol. 34, no 8, pp. 155-166, 5-Year Impact Factor : 1,920. [ DOI : 10.1111/cgf.12667 ]

    https://hal.archives-ouvertes.fr/hal-01162098
Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 12Z. JIANG, J.-F. Witz, P. Lecomte-Grosbras, J. Dequidt, S. Cotin, C. Rubod, C. Duriez, M. Brieu.

    Multiorgan Motion Tracking in Dynamic Magnetic Resonance Imaging for Evaluation of Pelvic System Mobility and Shear Strain, in: Strain, February 2017, vol. 53, no 2. [ DOI : 10.1111/str.12224 ]

    https://hal.inria.fr/hal-01496177
  • 13E. Kerrien, A. Yureidini, J. Dequidt, C. Duriez, R. Anxionnat, S. Cotin.

    Blood vessel modeling for interactive simulation of interventional neuroradiology procedures, in: Medical Image Analysis, January 2017, vol. 35, pp. 685 - 698. [ DOI : 10.1016/j.media.2016.10.003 ]

    https://hal.inria.fr/hal-01390923
  • 14F. Morin, H. Courtecuisse, I. Reinertsen, F. Le Lann, O. Palombi, Y. Payan, M. Chabanas.

    Brain-shift compensation using intraoperative ultrasound and constraint-based biomechanical simulation, in: Medical Image Analysis, 2017, vol. 40, pp. 133 - 153. [ DOI : 10.1016/j.media.2017.06.003 ]

    https://hal.archives-ouvertes.fr/hal-01560157
  • 15I. Peterlik, H. Courtecuisse, R. Rohling, P. Abolmaesumi, C. Nguan, S. Cotin, S. E. Salcudean.

    Fast Elastic Registration of Soft Tissues under Large Deformations, in: Medical Image Analysis, 2017, forthcoming.

    https://hal.inria.fr/hal-01613757
  • 16H. Phuoc Bui, S. Tomar, H. Courtecuisse, S. Cotin, S. Bordas.

    Real-time Error Control for Surgical Simulation, in: IEEE Transactions on Biomedical Engineering, June 2017, 12 p.

    https://hal.inria.fr/hal-01514621
  • 17R. Plantefève, I. Peterlik, S. Cotin.

    Intraoperative Biomechanical Registration of the Liver: Does the Heterogeneity of the Liver Matter?, in: IRBM, 2017, forthcoming.

    https://hal.inria.fr/hal-01625573
  • 18D. V. Sorokin, I. Peterlik, M. Tektonidis, K. Rohr, P. Matula.

    Non-rigid Contour-Based Registration of Cell Nuclei in 2D Live Cell Microscopy Images Using a Dynamic Elasticity Model, in: IEEE Transactions on Medical Imaging, 2017, 1 p, forthcoming. [ DOI : 10.1109/TMI.2017.2734169 ]

    https://hal.inria.fr/hal-01613732

International Conferences with Proceedings

  • 19Y. Adagolodjo, R. Trivisonne, N. Haouchine, S. Cotin, H. Courtecuisse.

    Silhouette-based Pose Estimation for Deformable Organs Application to Surgical Augmented Reality, in: IROS 2017 - IEEE/RSJ International Conference on Intelligent Robots and Systems, Vancouver, Canada, September 2017.

    https://hal.archives-ouvertes.fr/hal-01578815
  • 20J. G. Garcia Guevara, I. Peterlik, M.-O. Berger, S. Cotin.

    Automatic biomechanical graph matching CT-CBCT fusion, in: Surgetica 2017, Strasbourg, France, November 2017.

    https://hal.archives-ouvertes.fr/hal-01587952
  • 21N. Haouchine, S. Cotin.

    Template-based Monocular 3D Recovery of Elastic Shapes using Lagrangian Multipliers, in: Computer Vision and Pattern Recognition (CVPR), Honolulu, Hawai, United States, July 2017.

    https://hal.inria.fr/hal-01524609
  • 22N. Haouchine, D. Stoyanov, F. Roy, S. Cotin.

    DejaVu: Intra-operative Simulation for Surgical Gesture Rehearsal, in: Medical Image Computing and Computer Assisted Interventions Conference MICCAI 2017, Quebec City, Canada, October 2017.

    https://hal.archives-ouvertes.fr/hal-01542395
  • 23A. Mendizabal, R. B. Duparc, H. Phuoc Bui, C. J. Paulus, I. Peterlik, S. Cotin.

    Face-based Smoothed Finite Element Method for Real-time Simulation of soft tissue, in: SPIE Medical Imaging, Orlando, United States, February 2017.

    https://hal.inria.fr/hal-01444595
  • 24C. J. Paulus, R. Maier, D. Peterseim, S. Cotin.

    An Immersed Boundary Method for Detail-Preserving Soft Tissue Simulation from Medical Images, in: Computational Biomechanics for Medicine, Quebec, Canada, September 2017.

    https://hal.inria.fr/hal-01578447
  • 25I. Peterlik, N. Haouchine, L. Ručka, S. Cotin.

    Image-driven Stochastic Identification of Boundary Conditions for Predictive Simulation, in: 20th International Conference on Medical Image Computing and Computer Assisted Intervention, Québec, Canada, September 2017.

    https://hal.inria.fr/hal-01570811
  • 26A. Petit, F. Ficuciello, G. A. Fontanelli, L. Villani, B. Siciliano.

    Using Physical Modeling and RGB-D Registration for Contact Force Sensing on Deformable Objects, in: ICINCO 2017 - 14th International Conference on Informatics in Control, Automation and Robotics, Madrid, Spain, ScitePress, Springer (editors), Proceedings of the 14th International Conference on Informatics in Control, Automation and Robotics, ScitePress, July 2017, vol. 2, no 978-989-758-263-9, pp. 24-33. [ DOI : 10.5220/0006415900240033 ]

    https://hal.archives-ouvertes.fr/hal-01617243
  • 27R. Plantefève, S. Kadoury, A. Tang, I. Peterlik.

    Robust Automatic Graph-based Skeletonization of Hepatic Vascular Trees, in: CIIV STENT 2017, Québec, Canada, Proceedings CIIV STENT 2017, September 2017.

    https://hal.inria.fr/hal-01576771
  • 28L. Ručka, I. Peterlík.

    Fast reconstruction of image deformation field using radial basis function, in: ISBI2017 - International Symposium on Biomedical Imaging, Melbourne, Australia, April 2017.

    https://hal.inria.fr/hal-01445483
  • 29D. V. Sorokin, I. Peterlik, V. V. Ulman, D. Svoboda, M. Maška.

    Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia, in: International Symposium on Biomedical Imaging, Melbourne, Australia, April 2017.

    https://hal.inria.fr/hal-01445488
  • 30R. Trivisonne, E. Kerrien, S. Cotin.

    Augmented 3D Catheter Navigation using Constrained Shape from Template, in: Hamlyn Symposium, London, United Kingdom, June 2017.

    https://hal.inria.fr/hal-01545693

Conferences without Proceedings

  • 31H. P. BUI, S. Tomar, H. Courtecuisse, S. Cotin, S. P. A. Bordas.

    Real-time Error Control for Surgical Simulation, in: BIOMECHANICS AND COMPUTER ASSISTED SURGERY MEETS MEDICAL REALITY, Lille, France, August 2017.

    https://hal.archives-ouvertes.fr/hal-01571194

Other Publications

  • 32N. Haouchine, A. Petit, F. Roy, S. Cotin.

    Deformed Reality: Proof of concept and preliminary results, October 2017, ISMAR 2017 - 16th IEEE International Symposium on Mixed and Augmented Reality, Poster.

    https://hal.inria.fr/hal-01636772
References in notes
  • 33J. Allard, H. Courtecuisse, F. Faure.

    Implicit FEM solver on GPU for interactive deformation simulation, in: GPU computing gems Jade Edition, 2011, pp. 281–294.
  • 34A. Bilger, J. Dequidt, C. Duriez, S. Cotin.

    Biomechanical simulation of electrode migration for deep brain stimulation, in: Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011, 2011, pp. 339–346.
  • 35F. Chinesta, P. Ladeveze, E. Cueto.

    A short review on model order reduction based on proper generalized decomposition, in: Archives of Computational Methods in Engineering, 2011, vol. 18, no 4, 395 p.
  • 36H. Courtecuisse, J. Allard, K. Pierre, S. P.-A. Bordas, S. Cotin, C. Duriez.

    Real-time simulation of contact and cutting of heterogeneous soft-tissues, in: Medical Image Analysis, February 2014, 20 p.

    https://hal.inria.fr/hal-01097108
  • 37F. Dervaux, I. Peterlik, J. Dequidt, S. Cotin, C. Duriez.

    Haptic Rendering of Interacting Dynamic Deformable Objects Simulated in Real-Time at Different Frequencies, in: IROS - IEEE/RSJ International Conference on Intelligent Robots and Systems, Tokyo, Japan, IEEE, November 2013.

    https://hal.inria.fr/hal-00842866
  • 38N. Hamzé, A. Bilger, C. Duriez, S. Cotin, C. Essert.

    Anticipation of brain shift in deep brain stimulation automatic planning, in: Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE, IEEE, 2015, pp. 3635–3638.
  • 39N. Haouchine, J. Dequidt, M.-O. Berger, S. Cotin.

    Single View Augmentation of 3D Elastic Objects, in: International Symposium on Mixed and Augmented Reality - ISMAR, Munich, Germany, September 2014.

    https://hal.inria.fr/hal-01056323
  • 40N. Haouchine, J. Dequidt, E. Kerrien, M.-O. Berger, S. Cotin.

    Physics-based Augmented Reality for 3D Deformable Object, in: Eurographics Workshop on Virtual Reality Interaction and Physical Simulation, Darmstadt, Germany, December 2012.

    https://hal.inria.fr/hal-00768362
  • 41S. J. Julier, J. K. Uhlmann.

    A new extension of the Kalman filter to nonlinear systems, in: Int. symp. aerospace/defense sensing, simul. and controls, Orlando, FL, 1997, vol. 3, no 26, pp. 182–193.
  • 42P. Lecomte-Grosbras, M. Nassirou - Diallo, J.-F. Witz, D. Marchal, J. Dequidt, S. Cotin, M. Cosson, C. Duriez, M. Brieu.

    Towards a better understanding of pelvic system disorders using numerical simulation, in: Medical Image Computing and Computer Assisted Intervention, Nagoya, Japan, September 2013.

    https://hal.inria.fr/hal-00831245
  • 43P. Moireau, D. Chapelle, P. Le Tallec.

    Joint state and parameter estimation for distributed mechanical systems, in: Computer Methods in Applied Mechanics and Engineering, 2008, vol. 197, no 6-8, pp. 659-677. [ DOI : 10.1016/j.cma.2007.08.021 ]

    https://hal.archives-ouvertes.fr/hal-00175623
  • 44P. Moireau, D. Chapelle.

    Reduced-order Unscented Kalman Filtering with application to parameter identification in large-dimensional systems, in: ESAIM: Control, Optimisation and Calculus of Variations, 2011, vol. 17, no 2, pp. 380-405, See also erratum DOI:10.1051/cocv/2011001. [ DOI : 10.1051/cocv/2010006 ]

    https://hal.inria.fr/inria-00550104
  • 45P. Moireau, D. Chapelle, M. Yvinec.

    Cardiac motion extraction from images by filtering estimation based on a biomechanical model, in: FIMH'09 - 5th International Conference Functional Imaging and Modeling of the Heart, Nice, France, N. Ayache, H. Delingette, M. Sermesant (editors), Lecture Notes in Computer Science, Springer, June 2009, vol. 5528, pp. 220-228. [ DOI : 10.1007/978-3-642-01932-6_24 ]

    https://hal.inria.fr/hal-00772059
  • 46C. J. Paulus, N. Haouchine, D. Cazier, S. Cotin.

    Augmented Reality during Cutting and Tearing of Deformable Objects, in: The 14th IEEE International Symposium on Mixed and Augmented Reality, Fukuoka, Japan, September 2015, 6 p.

    https://hal.inria.fr/hal-01184495
  • 47C. J. Paulus, N. Haouchine, D. Cazier, S. Cotin.

    Surgical Augmented Reality with Topological Changes, in: Medical Image Computing and Computer Assisted Interventions, München, Germany, October 2015.

    https://hal.inria.fr/hal-01184498
  • 48I. Peterlik, H. Courtecuisse, C. Duriez, S. Cotin.

    Model-Based Identification of Anatomical Boundary Conditions in Living Tissues, in: Information Processing in Computer Assisted Interventions, Fukuoka, Japan, June 2014. [ DOI : 10.1007/978-3-319-07521-1_21 ]

    https://hal.inria.fr/hal-01264434
  • 49I. Peterlik, A. Klima.

    Towards an efficient data assimilation in physically-based medical simulations, in: Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on, IEEE, 2015, pp. 1412–1419.
  • 50I. Peterlik, M. Nouicer, C. Duriez, S. Cotin, A. Kheddar.

    Constraint-based haptic rendering of multirate compliant mechanisms, in: IEEE Transactions on Haptics (ToH), June 2011, vol. 4, no 3, pp. 175-187. [ DOI : 10.1109/TOH.2011.41 ]

    https://hal-lirmm.ccsd.cnrs.fr/lirmm-00784081
  • 51T. Pitiot, D. Cazier, T. Jund, A. Habibi, P. Kraemer.

    Deformable polygonal agents in crowd simulation, in: Computer Animation and Virtual Worlds, 2014, vol. 25, no 3-4, pp. 341–350.
  • 52R. Plantefève, I. Peterlik, N. Haouchine, S. Cotin.

    Patient-specific Biomechanical Modeling for Guidance during Minimally-invasive Hepatic Surgery, in: Annals of Biomedical Engineering, August 2015.

    https://hal.inria.fr/hal-01205194
  • 53H. Talbot, S. Marchesseau, C. Duriez, M. Sermesant, S. Cotin, H. Delingette.

    Towards an interactive electromechanical model of the heart, in: Interface focus, 2013, vol. 3, no 2, 20120091 p.
  • 54H. Talbot, F. Roy, S. Cotin.

    Augmented Reality for Cryoablation Procedures, in: SIGGRAPH 2015, Los Angeles, United States, August 2015.

    https://hal.inria.fr/hal-01180848
  • 55L. Untereiner, D. Cazier, D. Bechmann.

    n-Dimensional multiresolution representation of subdivision meshes with arbitrary topology, in: Graphical Models, 2013, vol. 75, no 5, pp. 231–246.
  • 56G. Zavarise, P. Wriggers.

    Trends in Computational Contact Mechanics, Lecture Notes in Applied and Computational Mechanics, Springer Berlin Heidelberg, 2011.

    https://books.google.fr/books?id=faSoa3k6NCYC


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