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MONC - 2017
MONC - 2017
Project-Team Monc
Personnel
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
Project-Team Monc
Personnel
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography


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Bibliography

Major publications by the team in recent years
  • 1E. Baratchart, S. Benzekry, A. Bikfalvi, T. Colin, L. S. Cooley, R. Pineau, E. J. Ribot, O. Saut, W. Souleyreau.

    Computational Modelling of Metastasis Development in Renal Cell Carcinoma, in: PLoS Computational Biology, November 2015, vol. 11, no 11. [ DOI : 10.1371/journal.pcbi.1004626 ]

    https://hal.inria.fr/hal-01164834
  • 2S. Benzekry, C. Lamont, D. Barbolosi, L. Hlatky, P. Hahnfeldt.

    Mathematical modeling of tumor-tumor distant interactions supports a systemic control of tumor growth, in: Cancer Research, 2017. [ DOI : 10.1158/0008-5472.CAN-17-0564 ]

    https://hal.inria.fr/hal-01566947
  • 3S. Benzekry, A. Tracz, M. Mastri, R. Corbelli, D. Barbolosi, J. M. L. Ebos.

    Modeling Spontaneous Metastasis following Surgery: An In Vivo-In Silico Approach, in: Cancer Research, February 2016, vol. 76, no 3, pp. 535 - 547. [ DOI : 10.1158/0008-5472.CAN-15-1389 ]

    https://hal.inria.fr/hal-01222046
  • 4D. Bresch, T. Colin, E. Grenier, B. Ribba, O. Saut.

    Computational Modeling Of Solid Tumor Growth: The Avascular Stage, in: SIAM Journal on Scientific Computing, August 2010, vol. 32, no 4, pp. 2321–2344.
  • 5T. Colin, F. Cornelis, J. Jouganous, J. Palussière, O. Saut.

    Patient specific simulation of tumor growth, response to the treatment and relapse of a lung metastasis: a clinical case, in: Journal of Computational Surgery, 2015, 18 p. [ DOI : 10.1186/s40244-014-0014-1 ]

    https://hal.inria.fr/hal-01102586
  • 6O. Gallinato, C. Poignard.

    Superconvergent second order Cartesian method for solving free boundary problem for invadopodia formation, in: Journal of Computational Physics, June 2017, vol. 339, pp. 412 - 431. [ DOI : 10.1016/j.jcp.2017.03.010 ]

    https://hal.inria.fr/hal-01483484
  • 7D.-C. Imbs, R. El Cheikh, A. Boyer, J. Ciccolini, C. Mascaux, B. Lacarelle, F. Barlesi, D. Barbolosi, S. Benzekry.

    Revisiting bevacizumab + cytotoxics scheduling using mathematical modeling: proof of concept study in experimental non-small cell lung carcinoma, in: CPT: Pharmacometrics and Systems Pharmacology, November 2017, forthcoming. [ DOI : 10.1002/psp4.12265 ]

    https://hal.inria.fr/hal-01624423
  • 8G. Lefebvre, F. Cornelis, P. Cumsille, T. Colin, C. Poignard, O. Saut.

    Spatial modelling of tumour drug resistance: the case of GIST liver metastases Mathematical Medicine and Biology Advance, in: Mathematical Medicine and Biology, 2016, vol. 00, pp. 1 - 26. [ DOI : 10.1093/imammb/dqw002 ]

    https://hal.inria.fr/hal-01380292
  • 9M. Leguebe, A. Silve, L. M. Mir, C. Poignard.

    Conducting and permeable states of cell membrane submitted to high voltage pulses: Mathematical and numerical studies validated by the experiments, in: Journal of Theoretical Biology, November 2014, vol. 360, pp. 83-94. [ DOI : 10.1016/j.jtbi.2014.06.027 ]

    https://hal.inria.fr/hal-01027477
  • 10F. Raman, E. Scribner, O. Saut, C. Wenger, T. Colin, H. M. Fathallah-Shaykh.

    Computational Trials: Unraveling Motility Phenotypes, Progression Patterns, and Treatment Options for Glioblastoma Multiforme, in: PLoS ONE, January 2016, vol. 11, no 1. [ DOI : 10.1371/journal.pone.0146617 ]

    https://hal.inria.fr/hal-01396271
Publications of the year

Doctoral Dissertations and Habilitation Theses

Articles in International Peer-Reviewed Journals

  • 12A. Andreychenko, B. Denis De Senneville, R. Navest, R. Tijssen, J. Lagendijk, C. Van Den Berg.

    Respiratory motion model based on the noise covariance matrix of a receive array, in: Magnetic Resonance in Medicine, 2017.

    https://hal.archives-ouvertes.fr/hal-01578318
  • 13M. Benguigui, D. Alishekevitz, M. Timaner, D. Shechter, Z. Raviv, S. Benzekry, Y. Shaked.

    Dose- and time-dependence of the host-mediated response to paclitaxel therapy: a mathematical modeling approach, in: Oncotarget, December 2017, vol. 9, no 2, pp. 2574-2590. [ DOI : 10.18632/oncotarget.23514 ]

    https://hal.inria.fr/hal-01672568
  • 14S. Benzekry, C. Lamont, D. Barbolosi, L. Hlatky, P. Hahnfeldt.

    Mathematical modeling of tumor-tumor distant interactions supports a systemic control of tumor growth, in: Cancer Research, 2017. [ DOI : 10.1158/0008-5472.CAN-17-0564 ]

    https://hal.inria.fr/hal-01566947
  • 15M. Borot de Battisti, B. Denis De Senneville, G. Hautvast, D. Binnekamp, J. Lagendijk, M. Maenhout, M. Moerland.

    A novel adaptive needle insertion sequencing for robotic, single needle MR-guided high-dose-rate prostate brachytherapy, in: Physics in Medicine and Biology, April 2017.

    https://hal.archives-ouvertes.fr/hal-01490835
  • 16A. Boyer, J. Ciccolini, C. Mascaux, D.-C. Imbs, R. El Cheikh, F. Barlesi, S. Benzekry.

    Etude de l'effet séquence bevacizumab/pemetrexed/cisplatine chez la souris porteuse de cancer du poumon non à petites cellules, in: Revue des Maladies Respiratoires, January 2017, vol. 34. [ DOI : 10.1016/j.rmr.2016.10.110 ]

    https://hal.inria.fr/hal-01540322
  • 17F. Cornelis, M. Martin, O. Saut, X. Buy, M. Kind, J. Palussiere, T. Colin.

    Precision of manual two-dimensional segmentations of lung and liver metastases and its impact on tumour response assessment using RECIST 1.1, in: European Radiology Experimental, December 2017, vol. 1, no 1. [ DOI : 10.1186/s41747-017-0015-4 ]

    https://hal.inria.fr/hal-01634849
  • 18B. Denis De Senneville, A. Novell, C. J. Arthuis, V. Mendes, P.-A. Dujardin, F. Patat, A. Bouakaz, J.-M. Escoffre, F. Perrotin.

    Development of a fluid dynamic model for quantitative contrast-enhanced ultrasound imaging, in: IEEE Transactions on Medical Imaging, 2017. [ DOI : 10.1109/TMI.2017.2743099 ]

    https://hal.archives-ouvertes.fr/hal-01578323
  • 19C. Ferrer, W. Bartels, M. van Stralen, B. Denis De Senneville, C. Moonen, C. Bos.

    Fluid filling of the digestive tract for improved proton resonance frequency shift-based MR thermometry in the pancreas, in: Journal of Magnetic Resonance Imaging, 2017.

    https://hal.archives-ouvertes.fr/hal-01578320
  • 20O. Gallinato, T. Colin, O. Saut, C. Poignard.

    Tumor growth model of ductal carcinoma: from in situ phase to stroma invasion, in: Journal of Theoretical Biology, September 2017, vol. 429, pp. 253 - 266. [ DOI : 10.1016/j.jtbi.2017.06.022 ]

    https://hal.inria.fr/hal-01598837
  • 21O. Gallinato, C. Poignard.

    Superconvergent second order Cartesian method for solving free boundary problem for invadopodia formation, in: Journal of Computational Physics, June 2017, vol. 339, pp. 412 - 431. [ DOI : 10.1016/j.jcp.2017.03.010 ]

    https://hal.inria.fr/hal-01483484
  • 22A. Guittet, C. Poignard, F. Gibou.

    A Voronoi Interface approach to cell aggregate electropermeabilization, in: Journal of Computational Physics, March 2017, vol. 332, pp. 143 - 159. [ DOI : 10.1016/j.jcp.2016.11.048 ]

    https://hal.inria.fr/hal-01483521
  • 23A. M. Henares-Molina, S. Benzekry, P. C. Lara, M. M. García-Rojo, V. M. Pérez-García, A. M. Martínez-González.

    Non-standard radiotherapy fractionations delay the time to malignant transformation of low-grade gliomas, in: PLoS ONE, 2017. [ DOI : 10.1371/journal.pone.0178552.t001 ]

    https://hal.inria.fr/hal-01532505
  • 24D.-C. Imbs, R. El Cheikh, A. Boyer, J. Ciccolini, C. Mascaux, B. Lacarelle, F. Barlesi, D. Barbolosi, S. Benzekry.

    Revisiting bevacizumab + cytotoxics scheduling using mathematical modeling: proof of concept study in experimental non-small cell lung carcinoma, in: CPT: Pharmacometrics and Systems Pharmacology, November 2017, pp. 1-9, forthcoming. [ DOI : 10.1002/psp4.12265 ]

    https://hal.inria.fr/hal-01624423
  • 25M. S. Leguèbe, M. G. Notarangelo, M. Twarogowska, R. Natalini, C. Poignard.

    Mathematical model for transport of DNA plasmids from the external medium up to the nucleus by electroporation, in: Mathematical Biosciences, March 2017, vol. 285, pp. 1-13. [ DOI : 10.1016/j.mbs.2016.11.015 ]

    https://hal.inria.fr/hal-01412380
  • 26S. Mollard, J. Ciccolini, D.-C. Imbs, R. El Cheikh, D. Barbolosi, S. Benzekry.

    Model-driven optimization of antiangiogenics + cytotoxics combination: application to breast cancer mice treated with bevacizumab + paclitaxel doublet leads to reduced tumor growth and fewer metastasis, in: Oncotarget, 2017. [ DOI : 10.18632/oncotarget.15484 ]

    https://hal.inria.fr/hal-01474679
  • 27M. Rochoux, A. Collin, C. Zhang, A. Trouvé, D. Lucor, P. Moireau.

    Front shape similarity measure for shape-oriented sensitivity analysis and data assimilation for Eikonal equation, in: ESAIM: Proceedings and Surveys, 2017, pp. 1-22, forthcoming.

    https://hal.inria.fr/hal-01625575
  • 28O. Seror, C. Poignard, O. Gallinato, R. Belkacem-Ourabia, O. Sutter.

    Irreversible Electroporation: Disappearance of Observable Changes at Imaging Does Not Always Imply Complete Reversibility of the Underlying Causal Tissue Changes, in: Radiology, January 2017, vol. 282, pp. 301 - 302. [ DOI : 10.1148/radiol.2017161809 ]

    https://hal.inria.fr/hal-01421863
  • 29B. Stemkens, M. Glitzner, C. Kontaxis, B. Denis De Senneville, F. Prins, S. Crijns, L. Kerkmeijer, J. Lagendijk, C. Van Den Berg, R. Tijssen.

    Effect of intra-fraction motion on the accumulated dose for free-breathing MR-guided stereotactic body radiation therapy of renal-cell carcinoma, in: Physics in Medicine and Biology, 2017.

    https://hal.archives-ouvertes.fr/hal-01578322
  • 30S. Toupin, P. Bour, M. Lepetit-Coiffe, V. Ozenne, B. Denis De Senneville, R. Schneider, A. Vaussy, A. Chaumeil, H. Cochet, F. Sacher, P. Jais, B. Quesson.

    Feasibility of real-time MR thermal dose mapping for predicting radiofrequency ablation outcome in the myocardium in vivo, in: Journal of Cardiovascular Magnetic Resonance, January 2017, vol. 19, no 1, 14 p.

    https://hal.archives-ouvertes.fr/hal-01461328
  • 31S. Toupin, B. Denis De Senneville, V. Ozenne, P. Bour, M. Lepetit-Coiffe, M. Boissenin, P. Jais, B. Quesson.

    Combination of principal component analysis and optical-flow motion compensation for improved cardiac MR thermometry, in: Physics in Medicine and Biology, January 2017, vol. 62, no 4, pp. 1208-1224.

    https://hal.archives-ouvertes.fr/hal-01461318
  • 32D. Voyer, A. Silve, L. M. Mir, R. Scorretti, C. Poignard.

    Dynamical modeling of tissue electroporation, in: Bioelectrochemistry, 2017, vol. 119, pp. 98 - 110, forthcoming. [ DOI : 10.1016/j.bioelechem.2017.08.007 ]

    https://hal.inria.fr/hal-01598846
  • 33C. Zachiu, B. Denis De Senneville, I. D. Dmitriev, C. T. W. Moonen, M. Ries.

    A framework for continuous target tracking during MR-guided high intensity focused ultrasound thermal ablations in the abdomen, in: Journal of Therapeutic Ultrasound, December 2017, vol. 5, no 1. [ DOI : 10.1186/s40349-017-0106-y ]

    https://hal.archives-ouvertes.fr/hal-01617622
  • 34C. Zachiu, M. Ries, C. Moonen, B. Denis De Senneville.

    An Adaptive Non-Local-Means Filter for Real-Time MR-Thermometry, in: IEEE Transactions on Medical Imaging, April 2017.

    https://hal.archives-ouvertes.fr/hal-01461332
  • 35C. Zachiu, M. M. Ries, P. Ramaekers, J.-L. Guey, C. T. W. Moonen, B. Denis De Senneville.

    Real-time non-rigid target tracking for ultrasound-guided clinical interventions, in: Physics in Medicine and Biology, October 2017, vol. 62, no 20, pp. 8154 - 8177. [ DOI : 10.1088/1361-6560/aa8c66 ]

    https://hal.archives-ouvertes.fr/hal-01617624

International Conferences with Proceedings

  • 36A. Henares-Molina, S. Benzekry, P. Lara, M. García-Rojo, V. Pérez-García, A. Martínez-González.

    Optimized radiotherapy protocols delay the malignant transformation of low-grade gliomas in-silico, in: 5th Quadrennial Meeting of the World Federation of Neuro-Oncology Societies, Zurich, Suisse, May 2017, vol. 19, no suppl 3 , pp. iii12 - iii12. [ DOI : 10.1093/neuonc/nox036.040 ]

    https://hal.inria.fr/hal-01517899

National Conferences with Proceedings

  • 37M. Prague, R. Thiébaut, P. Moireau, A. Collin.

    Joint-state and parameters estimation using nudging and SEIK filters for HIV mechanistic models, in: Journée de la statistique francaise, Avignon, France, June 2017.

    https://hal.inria.fr/hal-01579068

Scientific Books (or Scientific Book chapters)

  • 38C. Poignard, A. Silve, L. Wegner.

    Different Approaches Used in Modeling of Cell Membrane Electroporation, in: Handbook of Electroporation, Handbook of Electroporation, Springer, 2017, 24 p. [ DOI : 10.1007/978-3-319-26779-1_3-1 ]

    https://hal.inria.fr/hal-01483487

Internal Reports

  • 39M. Deville, R. Natalini, C. Poignard.

    A continuum mechanics model of enzyme-based tissue degradation in cancer therapies, Inria Bordeaux Sud-Ouest ; IMB - Institut de Mathématiques de Bordeaux ; Université de Bordeaux ; IAC - Istituto per le Applicazioni del Calcolo "M. Picone", Consiglio Nazionale delle Ricerche, February 2017, no RR-9030.

    https://hal.inria.fr/hal-01469180


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