SERPICO - 2017 - Annual activity report

SERPICO

SERPICO - 2017

Project-Team Serpico

Personnel

Overall Objectives

Glossary
Scientific context and motivations
Challenges in biological image processing and quantitative microscopy
Objectives of Serpico in cell imaging
Organization and collaborations

Research Program

Statistics and algorithms for computational microscopy
From image data to motion descriptors: trajectory computation and dynamics analysis
Biological and biophysical models and spatial statistics for quantitative bioimaging

Application Domains

Modeling and analysis of membrane transport and molecule trafficking at the single cell scale
Imaging and analysis of cytokskeleton dynamics during cell migration

Highlights of the Year

New Software and Platforms

ATLAS
C-CRAFT
F2D-SAFIR
GcoPS
Hullkground
Motion2D
ND-SAFIR
OWF
QuantEv
TMA-Lib
TOTH
Platforms

New Results

Statistical methods for image denoising and reconstruction
Algorithms for dejittering and deconvolving fluorescence Tissue MicroArray (TMA) images
Correlation-based method for membrane diffusion estimation during exocytosis in TIRFM
Classification of diffusion dynamics from particle trajectories
Spatial statistics, point patterns, and colocalization in fluorescence imaging
Data assimilation and modeling of cell division mechanism
Quantifying the spatial distribution of intracellular events
3D registration for correlative light-electron microscopy
Fast optical flow methods for 3D fluorescence microscopy
3D Convolutional Neural Networks for macromolecule localization in cryo-electron tomograms of intact cells
Estimation of parametric motion models with deep neural networks
Motion saliency in video sequences

Bilateral Contracts and Grants with Industry

Bilateral Contracts with Industry
Bilateral grants with industry

Partnerships and Cooperations

Regional Initiatives
National Initiatives
European Initiatives
International Initiatives
International Research Visitors

Dissemination

Promoting Scientific Activities
Teaching - Supervision - Juries

Bibliography

Major publications
Publications of the year
References in notes

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Section: Highlights of the Year

Highlights of the Year

The Serpico team will be the organizer of the 7th International Conference on “Quantitative BioImaging” (QBI) in January 2019 (300 attendees) in Rennes.

Juan Manual Perez Ru, Vincent Briane and Hoai-Nam Nguyeen defended their PhD thesis in December 2017.

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