Bibliography
Major publications by the team in recent years
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1C. Bénar, T. Papadopoulo, B. Torrésani, M. Clerc.
Consensus Matching Pursuit for Multi-Trial EEG Signals, in: Journal of Neuroscience Methods, 2009, vol. 180, p. 161–170. [ DOI : DOI: 10.1016/j.jneumeth.2009.03.005 ]
http://www. sciencedirect. com/ science/ article/ B6T04-4VWHVX5-2/ 2/ e6ebdc581a60cde843503fe30f9940d1 -
2R. Deriche, J. Calder, M. Descoteaux.
Optimal Real-Time Q-Ball Imaging Using Regularized Kalman Filtering with Incremental Orientation Sets., in: Medical Image Analysis, August 2009, vol. 13, no 4, p. 564–579.
http://dx. doi. org/ 10. 1016/ j. media. 2009. 05. 008 -
3M. Descoteaux, E. Angelino, S. Fitzgibbons, R. Deriche.
Regularized, Fast, and Robust Analytical Q-Ball Imaging, in: Magnetic Resonance in Medicine, 2007, vol. 58, no 3, p. 497–510.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2007/ descoteaux-angelino-etal:07. pdf -
4M. Descoteaux, R. Deriche, T. R. Knosche, A. Anwander.
Deterministic and Probabilistic Tractography Based on Complex Fibre Orientation Distributions, in: IEEE Transactions in Medical Imaging, February 2009, vol. 28, no 2, p. 269–286.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2009/ descoteaux-deriche-etal:09. pdf -
5A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc.
OpenMEEG: opensource software for quasistatic bioelectromagnetics, in: BioMedical Engineering OnLine, September 2010, vol. 9, no 45.
http://hal. inria. fr/ inria-00523624 -
6J. Kybic, M. Clerc, T. Abboud, O. Faugeras, R. Keriven, T. Papadopoulo.
A Common Formalism for the Integral Formulations of the Forward EEG Problem, in: IEEE Transactions on Medical Imaging, January 2005, vol. 24, p. 12–28.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2005/ kybic-clerc-etal:05. pdf -
7C. Lenglet, J. S. W. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. B. Pike, G. Sapiro, K. Siddiqi, P. Thompson.
Mathematical Methods for Diffusion MRI Processing, in: NeuroImage, March 2009, vol. 45, no 1, p. S111-S122..
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2009/ lenglet-campbell-etal:09. pdf -
8C. Lenglet, M. Rousson, R. Deriche, O. Faugeras.
Statistics on the Manifold of Multivariate Normal Distributions: Theory and Application to Diffusion Tensor MRI Processing, in: Journal of Mathematical Imaging and Vision, October 2006, vol. 25, no 3, p. 423-444.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2006/ lenglet-rousson-etal:06. pdf -
9S. Vallaghé, T. Papadopoulo.
A Trilinear Immersed Finite Element Method for Solving the Electroencephalography Forward Problem, in: SIAM Journal on Scientific Computing, 2010, vol. 32, no 4, p. 2379–2394. [ DOI : 10.1137/09075038X ]
http://link. aip. org/ link/ ?SCE/ 32/ 2379/ 1
Doctoral Dissertations and Habilitation Theses
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10A. Ghosh.
High Order Models in Diffusion MRI and Applications, Nice Sophia Antipolis University, April 2011.
ftp://ftp-sop. inria. fr/ athena/ Publications/ PhDs/ ghosh:11. pdf -
11E. Olivi.
Coupling of numerical methods for the forward problem in Magneto- and Electro-EncephaloGraphy, Nice Sophia Antipolis University, December 2011. -
12T. Papadopoulo.
Contributions and perspectives to computer vision, image processing and EEG/MEG data analysis, University of Nice-Sophia Antipolis, 2011, HDR.
Articles in International Peer-Reviewed Journal
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13M. Descoteaux, R. Deriche, D. Le Bihan, J.-F. Mangin, C. Poupon.
Multiple q-shell diffusion propagator imaging, in: Medical Image Analysis, 2011, vol. 15, p. 603–621. [ DOI : DOI: 10.1016/j.media.2010.07.001 ]
http://www. sciencedirect. com/ science/ article/ B6W6Y-50HYGF0-1/ 2/ 647c6da427c692f0968d6647ecb952f7 -
14J. Fruitet, M. Clerc, T. Papadopoulo.
Preliminary study for an hybrid BCI using sensorimotor rhythms and Beta rebound, in: International Journal of Bioelectromagnetism, 2011, vol. 13, p. 70–71.
http://ijbem. k. hosei. ac. jp/ 2006-/ volume13/ number2/ 2011_v13_no2_70-71. pdf -
15A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc.
Forward Field Computation with OpenMEEG, in: Computational Intelligence and Neuroscience, 2011. [ DOI : 10.1155/2011/923703 ]
http://www. hindawi. com/ journals/ cin/ 2011/ 923703/ -
16J. Liu, S. Kabadi, R. Van Uitert, N. Petrick, R. Deriche, R. M. Summers.
Improved computer-aided detection of small polyps in CT colonography using interpolation for curvature estimation., in: Med Phys., July 2011, vol. 38, no 7, p. 4276-84. [ DOI : 10.1118/1.3596529 ]
http://online. medphys. org/ resource/ 1/ mphya6/ v38/ i7 -
17N. Voges, S. Blanchard, F. Wendling, O. David, H. Benali, T. Papadopoulo, M. Clerc, C. Bénar.
Modeling of the Neurovascular Coupling in Epileptic Discharges, in: Brain Topography, 2011.
http://dx. doi. org/ 10. 1007/ s10548-011-0190-1
International Conferences with Proceedings
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18E. Caruyer, I. Aganj, C. Lenglet, G. Sapiro, R. Deriche.
On Line Reconstruction and Motion Detection in HARDI, in: 19th ISMRM annual meeting, Montréal, Canada, May 2011.
http://hal. inria. fr/ inria-00560899/ en -
19E. Caruyer, I. Aganj, C. Lenglet, G. Sapiro, R. Deriche.
Online Motion Detection in High Angular Resolution Diffusion Imaging, in: International Symposium on Biomedical Imaging: From Nano to Macro, Chicago, United States, March 2011.
http://hal. inria. fr/ inria-00559904/ en -
20E. Caruyer, J. Cheng, C. Lenglet, G. Sapiro, T. Jiang, R. Deriche.
Optimal Design of Multiple Q-shells experiments for Diffusion MRI, in: MICCAI Workshop on Computational Diffusion MRI - CDMRI'11, Toronto, Canada, September 2011.
http://hal. inria. fr/ inria-00617663/ en -
21E. Caruyer, C. Lenglet, G. Sapiro, R. Deriche.
Incremental gradient table for multiple Q-shells diffusion MRI, in: HBM 17th Annual Meeting, Québec, Canada, June 2011.
http://hal. inria. fr/ inria-00617957/ en -
22J. Cheng, A. Ghosh, T. Jiang, R. Deriche.
A Riemannian Framework for Ensemble Average Propagator Computing, in: ISMRM, 2011.
http://hal. inria. fr/ inria-00615436/ PDF/ RiemannianEAP_ismrm_2011_final. pdf -
23J. Cheng, A. Ghosh, T. Jiang, R. Deriche.
Diffeomorphism Invariant Riemannian Framework for Ensemble Average Propagator Computing, in: MICCAI, 2011.
http://hal. inria. fr/ inria-00615431/ PDF/ RiemannianFramework4EAP_MICCAI2011. pdf -
24J. Cheng, T. Jiang, R. Deriche.
Theoretical Analysis and Practical Insights on EAP Estimation via a Unified HARDI Framework, in: MICCAI workshop on Computational Diffusion MRI, 2011.
http://hal. inria. fr/ inria-00615430/ PDF/ AFTSC_compare_CDMRI2011. pdf -
25J. Cheng, S. Merlet, E. Caruyer, A. Ghosh, T. Jiang, R. Deriche.
Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging, in: MICCAI workshop on Computational Diffusion MRI, 2011.
http://hal. inria. fr/ inria-00615437/ PDF/ L1SPFI_CS_ISMRM_final. pdf -
26J. Cheng, S. Merlet, A. Ghosh, E. Caruyer, T. Jiang, R. Deriche.
Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging, in: ISMRM, 2011.
http://hal. inria. fr/ inria-00615437/ PDF/ L1SPFI_CS_ISMRM_final. pdf -
27M. Clerc, J.-M. Badier, E. Olivi, A. Gramfort, T. Papadopoulo.
OpenMEEG for calibrating the conductivity of nested compartment models, in: EIT conference, 2011. -
28M. Clerc, L. Koessler, J.-M. Badier, M. Gavaret.
In vivo scalp-to-skull conductivity ratio calibration: an EIT study, in: EIT conference, 2011. -
29A. Ghosh, R. Deriche.
Extracting Geometrical Features and Peak Fractional Anisotropy from the ODF for White Matter Characterization, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, S. Wright, X. Pan, M. Liebling (editors), IEEE Press, April 2011, p. 266-271.
ftp://ftp-sop. inria. fr/ athena/ Publications/ 2011/ ghosh-deriche:11. pdf -
30A. Ghosh, D. Wassermann, R. Deriche.
A Polynomial Approach for Maxima Extraction and Its Application to Tractography in HARDI, in: Information Processing in Medical Imaging, G. Székely, H. K. Hahn (editors), Lecture Notes in Computer Science, Springer, July 2011, vol. 6801, p. 723–734.
ftp://ftp-sop. inria. fr/ athena/ Publications/ 2011/ ghosh-wassermann-etal:11. pdf -
31M. Liu, B. C. Vemuri, R. Deriche.
Simultaneous Smoothing and Estimation of DTI via Robust Variational Non-local Means, in: MICCAI 2011 Workshop on Computational Diffusion MRI (CDMRI), September 2011.
http://www. cise. ufl. edu/ ~mliu/ DTIEst_MICCAI_CDMRI11. pdf -
32S. Merlet, E. Caruyer, R. Deriche.
Impact of radial and angular sampling on multiple shells acquisition in diffusion MRI, in: MICCAI, Springer, 2011, vol. 6891, p. 113-121.
http://hal. archives-ouvertes. fr/ hal-00614387/ en/ -
33S. Merlet, J. Cheng, A. Ghosh, R. Deriche.
Spherical Polar Fourier EAP and ODF Reconstruction via Compressed Sensing in Diffusion MRI, in: Proceedings of ISBI, April 2011.
http://hal. archives-ouvertes. fr/ inria-00585694/ -
34E. Olivi, M. Clerc, T. Papadopoulo.
Handling white-matter anisotropy in BEM for the EEG forward problem, in: Proceedings of ISBI, 2011.
http://hal. inria. fr/ inria-00578876/ PDF/ OLIVI_article. pdf
Conferences without Proceedings
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35P. Barttfeld, J. Calvar, S. Cukier, R. Deriche, R. Leiguarda, S. Navarta, M. Sigman, D. Wassermann, B. Wicker.
Large-scale network analysis reflects big-world characteristics in ASD, in: 17th Annual Meeting of the Organization on Human Brain Mapping, Quebec City, Canada, June 2011. -
36E. Olivi, A. Gramfort, T. Papadopoulo, M. Clerc.
Adjoint method for lead-fields computation in MEEG, in: HBM'2011, Québec City, Canada, OHBM, June 2011, POSTER.
http://hal. inria. fr/ inria-00603769/ fr/ -
37D. Wassermann, A.-C. Philippe, P. Barttfeld, B. Wicker, M. Sigman, R. Deriche.
Tract-based statistical analyzes in dMRI in autism spectrum disorder, in: 17th Annual Meeting of the Organization on Human Brain Mapping, Quebec City, Canada, June 2011.
Internal Reports
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38M. Clerc, J. Leblond, J.-P. Marmorat, T. Papadopoulo.
Source localization using rational approximation on plane sections, INRIA, 2011, no 7704.
http://hal. inria. fr/ inria-00613644/ fr/ -
39J. Fruitet, A. Carpentier, R. Munos, M. Clerc.
Automatic motor task selection via a bandit algorithm for a brain-controlled button, INRIA, 2011, no 7721.
http://hal. inria. fr/ inria-00624686/ fr/
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40A. Barmpoutis, M. S. Hwang, D. Howland, J. R. Forder, B. C. Vemuri.
Regularized Positive-Definite Fourth-Order Tensor Field Estimation from DW-MRI, in: NeuroImage, March 2009, vol. 45, no 1, p. S153-162.. [ DOI : doi:10.1016/j.neuroimage.2008.10.056 ]
http://www. sciencedirect. com/ science/ journal/ 10538119 -
41P. J. Basser, J. Mattiello, D. Le Bihan.
Estimation of the effective self-diffusion tensor from the NMR spin echo, in: Journal of Magnetic Resonance, 1994, vol. B, no 103, p. 247–254. -
42P. J. Basser, J. Mattiello, D. Le Bihan.
MR Diffusion Tensor Spectroscopy and imaging, in: Biophysical Journal, 1994, vol. 66, no 1, p. 259–267. -
43C. Beaulieu.
The basis of anisotropic water diffusion in the nervous system - a technical review, in: NMR in Biomedicine, 2002, vol. 15, p. 435-455. -
44T. E. J. Behrens, H. Johansen-Berg, S. Jbabdi, M. Rushworth, M. Woolrich.
Probabilistic diffusion tractography with multiple fibre orientations. What can we gain?, in: NeuroImage, January 2007, vol. 34, no 1, p. 144-155.
http://www. ncbi. nlm. nih. gov/ pubmed/ 17070705 -
45M. Descoteaux, E. Angelino, S. Fitzgibbons, R. Deriche.
Apparent Diffusion Coefficients from High Angular Resolution Diffusion Imaging: Estimation and Applications, in: Magnetic Resonance in Medicine, 2006, vol. 56, p. 395–410.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2006/ descoteaux-angelino-etal:06c. pdf -
46M. Descoteaux, R. Deriche.
High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution, in: Journal of Mathematical Imaging and Vision, February 2009, vol. 33, no 2, p. 239-252.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2009/ descoteaux-deriche:09. pdf -
47Q. Dong, R. Welsh, T. Chenevert, R. Carlos, P. Maly-Sundgren, D. Gomez-Hassan, S. Mukherji.
Clinical Applications of Diffusion Tensor Imaging, in: Journal of Magnetic Resonance Imaging, 2004, vol. 19, p. 6–18. -
48A. Ghosh, R. Deriche.
From Second to Higher Order Tensors in Diffusion-MRI, in: Tensors in Image Processing and Computer Vision, S. Aja-Fernández, R. de Luis García, D. Tao, X. Li (editors), Advances in Pattern Recognition, Springer London, May 2009, chap. 9. [ DOI : 10.1007/978-1-84882-299-3 ]
http://www. springer. com/ computer/ computer+imaging/ book/ 978-1-84882-298-6 -
49S. I. Gonçalves, J. C. de Munck, J. P. Verbunt, F. Bijma, R. M. Heethaar, F. L. da Silva.
In Vivo Measurement of the Brain and Skull Resistivities using an EIT-Based Method and Realistic Models for the Head, in: IEEE Transactions on Biomedical Engineering, 2003, vol. 50, no 6. -
50K. M. Jansons, D. C. Alexander.
Persistent angular structure: new insights fom diffusion magnetic resonance imaging data, in: Inverse Problems, 2003, vol. 19, p. 1031-1046. -
51D. Le Bihan, E. Breton.
Imagerie de Diffusion it in vivo par Résonnance Magnétique Nucléaire, in: CR Académie des Sciences, 1985, no 301, p. 1109-1112. -
52D. Le Bihan, J.-F. Mangin, C. Poupon, C. Clark, S. Pappata, N. Molko, H. Chabriat.
Diffusion tensor imaging: concepts and applications., in: J Magn Reson Imaging., 2001, vol. 13, no 4, p. 534-46.
http://www. ncbi. nlm. nih. gov/ pubmed/ 11276097 -
53C. Lenglet, J. S. W. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. B. Pike, G. Sapiro, K. Siddiqi, P. Thompson.
Mathematical Methods for Diffusion MRI Processing, in: NeuroImage, March 2009, vol. 45, no 1, p. S111-S122..
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2009/ lenglet-campbell-etal:09. pdf -
54C. Lenglet, M. Rousson, R. Deriche.
DTI Segmentation by Statistical Surface Evolution, in: IEEE Transactions on Medical Imaging,, June 2006, vol. 25, no 06, p. 685–700.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2006/ lenglet-rousson-etal:06c. pdf -
55K. Merboldt, W. Hanicke, J. Frahm.
Self-diffusion NMR Imaging Using Stimulated Echoes, in: J. Magn. Reson., 1985, vol. 64, p. 479–486. -
56M. Moseley, Y. Cohen, J. Mintorovitch, J. Kucharczyk, J. Tsuruda, P. Weinstein, D. Norman.
Evidence of Anisotropic Self-Diffusion, in: Radiology, 1990, vol. 176, p. 439–445. -
57T. Oostendorp, J. Delbeke, D. Stegeman.
The Conductivity of the Human Skull: Results of In Vivo and In Vitro Measurements, in: IEEE Transactions on Biomedical Engineering, December 2000, vol. 47, no 11, p. 1487–1492. -
58P. Osment, K. Packer, M. Taylor, J. J. Attard, T. A. Carpenter, L. D. Hall, S. J. Doran, N. J. Herrod.
NMR Imaging of Fluids in Porous Solids, in: Phil. Trans. Roy. Soc., 1990, vol. 333, p. 441–452. -
59C. Pierpaoli, P. Jezzard, P. J. Basser, A. Barnett, G. D. Chiro.
Diffusion Tensor MR Imaging of Human Brain, in: Radiology, 1996, vol. 201, p. 637–648. -
60C. Poupon.
Détection des faisceaux de fibres de la substance blanche pour l'étude de la connectivité anatomique cérébrale., Ecole Nationale Supérieure des Télécommunications, December 1999. -
61S. Rossignol, M. Schwab, M. Schwartz, M. Fehlings.
Spinal cord injury: time to move ?, in: The Journal of Neuroscience,, October 2007, vol. 27, p. 11782-11792. [ DOI : doi:10.1523/JNEUROSCI.3444-07.2007 ]
http://www. jneurosci. org/ cgi/ content/ full/ 27/ 44/ 11782 -
62D. Taylor, M. Bushell.
The spatial mapping of translational diffusion coefficients by the NMR imaging technique, in: Phys. Med. Biol., 1985, vol. 30, p. 345-349. [ DOI : 10.1088/0031-9155/30/4/009 ]
http://www. iop. org/ EJ/ abstract/ 0031-9155/ 30/ 4/ 009 -
63S. Thuret, L. Moon, F. Gage.
Therapeutic interventions after spinal cord injury., in: Nature Reviews Neuroscience, August 2006, vol. 7, p. 628-643. [ DOI : doi:10.1038/nrn1955 ]
http://www. nature. com/ nrn/ journal/ v7/ n8/ full/ nrn1955. html -
64D. S. Tuch, J. W. Belliveau, R. Weisskoff, V. J. Wedeen.
High Angular Resolution Imaging of the Human Brain, in: Proceedings of the International Society for the Magnetic Resonance in Medecine, April 1999.
http://cds. ismrm. org/ ismrm-1999/ PDF2/ 321. pdf -
65D. S. Tuch, T. G. Reese, M. R. Wiegell, N. G. Makris, J. W. Belliveau, V. J. Wedeen.
High Angular Resolution Diffusion Imaging Reveals Intravoxel White Matter Fiber Heterogeneity, in: Magn. Res. Med., 2002, vol. 48, no 4, p. 577–582. -
66D. S. Tuch.
Diffusion MRI of Complex Tissue Structure, Harvard University and Massachusetts Institute of Technology, 2002. -
67S. Vallaghé, M. Clerc, J.-M. Badier.
In vivo conductivity estimation using somatosensory evoked potentials and cortical constraint on the source, in: Proceedings of ISBI 2007, April 2007, p. 1036–1039.
http://ieeexplore. ieee. org/ xpls/ abs_all. jsp?arnumber=4193466 -
68S. Vallaghé, M. Clerc.
A global sensitivity analysis of three and four-layer EEG conductivity models, in: IEEE Transactions on Biomedical Engineering, April 2009, vol. 56, no 4, p. 988–995.
http://ieeexplore. ieee. org/ stamp/ stamp. jsp?arnumber=04671116 -
69S. Vallaghé, T. Papadopoulo, M. Clerc.
The adjoint method for general EEG and MEG sensor-based lead field equations, in: Physics in Medicine and Biology, 2009, vol. 54, p. 135–147.
ftp://ftp-sop. inria. fr/ odyssee/ Publications/ 2009/ vallaghe-papadopoulo-etal:09. pdf -
70D. Wassermann, L. Bloy, E. Kanterakis, R. Verma, R. Deriche.
Unsupervised white matter fiber clustering and tract probability map generation: Applications of a Gaussian process framework for white matter fibers, in: Neuroimage, May 2010, vol. 51, no 1, p. 228–241.
http://dx. doi. org/ 10. 1016/ j. neuroimage. 2010. 01. 004 -
71V. J. Wedeen, T. G. Reese, D. S. Tuch, M. R. Weigell, J.-G. Dou, R. M. Weiskoff, D. Chessler.
Mapping Fiber Orientation Spectra in Cerebral White Matter with Fourier-Transform Diffusion MRI, in: Proceedings of the International Society for the Magnetic Resonance in Medecine: 8th Scientific Meeting and Exhibition, 2000, no 82. -
72D. Weinstein, L. Zhukov, C. Johnson.
Lead-field bases for electroencephalography source imaging, in: Annals of Biomedical Engineering, September 2000, vol. 28, no 9, p. 1059-1164. -
73C. H. Wolters, L. Grasedyck, W. Hackbusch.
Efficient computation of lead field bases and influence matrix for the FEM-based EEG and MEG inverse problem, in: Inverse Problems, 2004, vol. 20, p. 1099–1116. -
74E. Özarslan, T. H. Mareci.
Generalized Diffusion Tensor Imaging and Analytical Relationships Between Diffusion Tensor Imaging and High Angular Resolution Imaging, in: Magnetic Resonance in Medicine, 2003, vol. 50, p. 955–965. -
75E. Özarslan, N. Shemesh, C. G. Koay, Y. Cohen, P. J. Basser.
NMR characterization of general compartment size distributions, in: New Journal of Physics, 2011, vol. 13. -
76E. Özarslan, T. Shepherd, B. C. Vemuri, S. Blackband, T. H. Mareci.
Resolution of Complex Tissue Microarchitecture Using the Diffusion Orientation Transform (DOT), in: NeuroImage, 2006, vol. 31, no 3, p. 1086–1103. -
77E. Özarslan, B. C. Vemuri, T. H. Mareci.
Generalized Scalar Measures for Diffusion MRI Using Trace, Variance and Entropy, in: Magnetic Resonance in Medicine, 2005, vol. 53, no 4, p. 866-876.