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PARIETAL - 2011
PARIETAL - 2011


Project Team Parietal


Members
Overall Objectives
Scientific Foundations
Application Domains
Software
New Results
Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography


Project Team Parietal


Members
Overall Objectives
Scientific Foundations
Application Domains
Software
New Results
Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography




Bibliography

Major publications by the team in recent years
  • 1P. Fillard, C. Poupon, J.-F. Mangin.

    A Novel Global Tractography Framework based on an Adaptive Spin Glass Model, in: Proc. 12th MICCAI, 2009.

    ftp://static.lnao.fr/lnao/static/papers/Fillard-MICCAI09.pdf
  • 2A. Knops, B. Thirion, E. Hubbard, V. Michel, S. Dehaene.

    Recruitment of an area involved in eye movements during mental arithmetic., in: Science, Jun 2009, vol. 324, no 5934, p. 1583–1585.
  • 3V. Michel, A. Gramfort, G. Varoquaux, E. Eger, B. Thirion.

    Total variation regularization for fMRI-based prediction of behaviour., in: IEEE Transactions on Medical Imaging, February 2011, vol. 30, no 7, p. 1328 - 1340. [ DOI : 10.1109/TMI.2011.2113378 ]

    http://hal.inria.fr/inria-00563468/en
  • 4B. Thirion, E. Duchesnay, E. Hubbard, J. Dubois, J.-B. Poline, D. Le Bihan, S. Dehaene.

    Inverse retinotopy: inferring the visual content of images from brain activation patterns., in: Neuroimage, Dec 2006, vol. 33, no 4, p. 1104–1116. [ DOI : 10.1016/j.neuroimage.2006.06.062 ]
  • 5B. Thirion, P. Pinel, A. Tucholka, A. Roche, P. Ciuciu, J.-F. Mangin, J.-B. Poline.

    Structural Analysis of fMRI Data Revisited: Improving the Sensitivity and Reliability of fMRI Group Studies, in: IEEE Trans. Med. Imag., September 2007, vol. 26, no 9, p. 1256–1269.
  • 6G. Varoquaux, F. Baronnet, A. Kleinschmidt, P. Fillard, B. Thirion.

    Detection of brain functional-connectivity difference in post-stroke patients using group-level covariance modeling, in: Medical Image Computing and Computer Added Intervention, Chine Beijing, Springer, Sep 2010.

    http://hal.inria.fr/inria-00512417
  • 7G. Varoquaux, A. Gramfort, F. Pedregosa, V. Michel, B. Thirion.

    Multi-subject dictionary learning to segment an atlas of brain spontaneous activity, in: Information Processing in Medical Imaging, Kaufbeuren, Germany, Lecture Notes in Computer Science, Springer, July 2011, vol. 6801, p. 562-573. [ DOI : 10.1007/978-3-642-22092-0_46 ]

    http://hal.inria.fr/inria-00588898/en
  • 8G. Varoquaux, A. Gramfort, J.-B. Poline, B. Thirion.

    Brain covariance selection: better individual functional connectivity models using population prior, in: Advances in Neural Information Processing Systems, Canada Vancouver, John Lafferty, Dec 2010.

    http://hal.inria.fr/inria-00512451
  • 9G. Varoquaux, S. Sadaghiani, P. Pinel, A. Kleinschmidt, J.-B. Poline, B. Thirion.

    A group model for stable multi-subject ICA on fMRI datasets., in: NeuroImage, May 2010, vol. 51, no 1, p. 288-99.

    http://hal.inria.fr/hal-00489507
Publications of the year

Articles in International Peer-Reviewed Journal

  • 10P. Fillard, M. Descoteaux, A. Goh, S. Gouttard, B. Jeurissen, J. Malcolm, A. Ramirez-Manzanares, M. Reisert, K. Sakaie, F. Tensaouti, T. Yo, J.-F. Mangin, C. Poupon.

    Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom., in: NeuroImage, May 2011, vol. 56, no 1, p. 220-34. [ DOI : 10.1016/j.neuroimage.2011.01.032 ]

    http://hal.inria.fr/inria-00559191/en
  • 11P. Fillard, X. Pennec, P. Thompson, N. Ayache.

    Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines, in: NeuroImage, 2011, Accepted for publication.

    http://hal.inria.fr/inria-00616179/en
  • 12A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc.

    Forward Field Computation with OpenMEEG., in: Comput Intell Neurosci, 2011, vol. 2011. [ DOI : 10.1155/2011/923703 ]

    http://hal.inria.fr/inria-00584205/en
  • 13V. Michel, E. Eger, C. Keribin, B. Thirion.

    Multiclass Sparse Bayesian Regression for fMRI-Based Prediction, in: International Journal of Biomedical Imaging, April 2011, vol. 2011, epub. [ DOI : 10.1155/2011/350838 ]

    http://hal.inria.fr/inria-00609365/en
  • 14V. Michel, A. Gramfort, G. Varoquaux, E. Eger, C. Keribin, B. Thirion.

    A supervised clustering approach for fMRI-based inference of brain states, in: Pattern Recognition, April 2011, epub ahead of print. [ DOI : 10.1016/j.patcog.2011.04.006 ]

    http://hal.inria.fr/inria-00589201/en
  • 15V. Michel, A. Gramfort, G. Varoquaux, E. Eger, B. Thirion.

    Total variation regularization for fMRI-based prediction of behaviour., in: IEEE Transactions on Medical Imaging, February 2011, vol. 30, no 7, p. 1328 - 1340. [ DOI : 10.1109/TMI.2011.2113378 ]

    http://hal.inria.fr/inria-00563468/en
  • 16P. Ramachandran, G. Varoquaux.

    Mayavi: 3D visualization of scientific data, in: Computing and Science and Engineering, February 2011, vol. 13, no 2, p. 40-51. [ DOI : 10.1109/MCSE.2011.35 ]

    http://hal.inria.fr/inria-00528985/en
  • 17S. Van Der Walt, S. C. Colbert, G. Varoquaux.

    The NumPy array: a structure for efficient numerical computation, in: Computing in Science and Engineering, March 2011, vol. 13, no 2, p. 22-30. [ DOI : 10.1109/MCSE.2011.37 ]

    http://hal.inria.fr/inria-00564007/en
  • 18Y. Wang, A. Gupta, Z. Liu, H. Zhang, M. L. Escolar, J. H. Gilmore, S. Gouttard, P. Fillard, E. Maltbie, G. Gerig, M. Styner.

    DTI registration in atlas based fiber analysis of infantile Krabbe disease., in: NeuroImage, January 2011, epub ahead of print. [ DOI : 10.1016/j.neuroimage.2011.01.038 ]

    http://hal.inria.fr/inria-00561481/en

International Conferences with Proceedings

  • 19P. Ciuciu, G. Varoquaux, P. Abry, M. Almog.

    Multifractal Analysis of Resting State Networks in Functional MRI, in: IEEE International Symposium on Biomedical Imaging, Chicago, United States, April 2011, 6 p, paper ID 1544.

    http://hal.inria.fr/cea-00558870/en
  • 20F. Deligianni, G. Varoquaux, B. Thirion, E. Robinson, D. Sharp, D. Edwards, D. Rueckert.

    A probabilistic framework to infer brain functional connectivity from anatomical connections, in: Information Processing in Medical Imaging, Kaufbeuren, Germany, Springer, July 2011, vol. 6801, p. 296-307. [ DOI : 10.1007/978-3-642-22092-0_25 ]

    http://hal.inria.fr/inria-00627914/en
  • 21V. Fritsch, G. Varoquaux, T. Benjamin, J.-B. Poline, B. Thirion.

    Detecting Outlying Subjects in High-Dimensional Neuroimaging Datasets with Regularized Minimum Covariance Determinant, in: Medical Image Computing and Computer Assisted Intervention, Toronto, Canada, Springer-Verlag, 2011, vol. Part III, p. 264-271. [ DOI : 10.1007/978-3-642-23626-6_33 ]

    http://hal.inria.fr/inria-00626857/en
  • 22A. Gramfort, D. Strohmeier, J. Haueisen, M. Hamalainen, M. Kowalski.

    Functional brain imaging with M/EEG using structured sparsity in time-frequency dictionaries, in: International Conference on Information Processing in Medical Imaging (IPMI '11), Irsee, Germany, Springer, July 2011, vol. 6801, p. 600-611. [ DOI : 10.1007/978-3-642-22092-0_49 ]

    http://hal.inria.fr/inria-00605502/en
  • 23B. Ng, A. Rafeef, G. Varoquaux, J.-B. Poline, B. Thirion.

    Connectivity-informed fMRI Activation Detection, in: Medical Image Computing and Computed Aided Intervention, Toronto, Canada, G. Fichtinger, A. Martel, T. Peters (editors), 2011, Springer-Verlag, 2011, vol. 6892, p. 285-292. [ DOI : 10.1007/978-3-642-23629-7_35 ]

    http://hal.inria.fr/inria-00627523/en
  • 24D. Strohmeier, A. Gramfort, J. Haueisen, M. Hämäläinen, M. Kowalski.

    M/EEG source reconstruction based on Gabor thresholding in the source space, in: NFSI 2011, Banff, Canada, May 2011.

    http://hal.inria.fr/hal-00621044/en
  • 25G. Varoquaux, A. Gramfort, F. Pedregosa, V. Michel, B. Thirion.

    Multi-subject dictionary learning to segment an atlas of brain spontaneous activity, in: Information Processing in Medical Imaging, Kaufbeuren, Germany, Lecture Notes in Computer Science, Springer, July 2011, vol. 6801, p. 562-573. [ DOI : 10.1007/978-3-642-22092-0_46 ]

    http://hal.inria.fr/inria-00588898/en

National Conferences with Proceeding

  • 26A. Gramfort, D. Strohmeier, J. Haueisen, M. Hämäläinen, M. Kowalski.

    Apport des dictionnaires temps-fréquence, de la parcimonie et des structures pour l'imagerie cérébrale fonctionnelle M/EEG, in: GRETSI 2011, Bordeaux, France, September 2011.

    http://hal.inria.fr/hal-00621040/en

Scientific Books (or Scientific Book chapters)

  • 27X. Pennec, P. Fillard.

    Statistical Computing On Non-Linear Spaces For Computational Anatomy, in: Biomedical Image Analysis: Methodologies And Applications, N. Paragios, J. Duncan, N. Ayache (editors), Springer, 2011, To Appear.

    http://hal.inria.fr/inria-00616201/en
  • 28V. Siless, P. Guevara, X. Pennec, P. Fillard.

    Joint T1 and Brain Fiber Diffeomorphic Registration Using the Demons, in: Multimodal Brain Image Analysis, T. Liu, D. Shen, L. Ibanez, X. Tao (editors), Lecture Notes in Computer Science, Springer Berlin / Heidelberg, 2011, vol. 7012, p. 10-18. [ DOI : 10.1007/978-3-642-24446-9_2 ]

    http://hal.inria.fr/inria-00627971/en

Internal Reports

  • 29R. Jenatton, A. Gramfort, V. Michel, G. Obozinski, E. Eger, F. Bach, B. Thirion.

    Multi-scale Mining of fMRI data with Hierarchical Structured Sparsity, INRIA, May 2011.

    http://hal.inria.fr/inria-00589785/en

Other Publications