GENSCALE - 2013 - Annual activity report

GENSCALE

GENSCALE - 2013

Project-Team Genscale

Members

Overall Objectives

High throughput processing of genomic data
Highlights of the Year

Research Program

Introduction
Data structure
Combinatorial optimization
Parallelism

Application Domains

Sequence comparison
Genome comparison
Protein comparison

Software and Platforms

Next Generation Sequencing
High throughput sequence analysis
3D Protein structures
HPC and Parallelism

New Results

NGS methodology
NGS applications
HPC and parallelism
Protein structures

Bilateral Contracts and Grants with Industry

I-Lab Koriscale
Sequence Comparison, Korilog
Sequence Comparison, Kalray
Peapol
Rapsodyn

Partnerships and Cooperations

Regional Initiatives
National Initiatives
European Initiatives
International Initiatives
International Research Visitors

Dissemination

Scientific Animation
Teaching - Supervision - Juries
Popularization

Bibliography

Major publications
Publications of the year

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2013 Project-Team Activity Report

GENSCALE

Scalable, Optimized and Parallel Algorithms for Genomics

Research centre: Rennes - Bretagne-Atlantique

In partnership with: CNRS, Université Rennes 1, Ecole normale supérieure de Cachan

In collaboration with: Institut de recherche en informatique et systèmes aléatoires (IRISA)

Field: Digital Health, Biology and Earth

Theme: Computational Biology

Keywords: Computational Biology, Next Generation Sequencing, Genomics, Protein Structure, Big Data, Parallelism