Bibliography

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 1A. Mottini.
  
  Axon Morphology Analysis: from Image Processing to Modelling, Universite de Nice Sophia-Antipolis (UNS), September 2014.
  
  https://hal.inria.fr/tel-01074620

Articles in International Peer-Reviewed Journals

• 2S. Ben Hadj, L. Blanc-Féraud, G. Aubert.
  
  Space Variant Blind Image Restoration *, in: SIAM Journal on Imaging Sciences, 2014, vol. 7, pp. 2196 - 2225. [ DOI : 10.1137/130945776 ]
  
  https://hal.inria.fr/hal-01096491
• 3A. Habbal, H. Barelli, G. Malandain.
  
  Assessing the ability of the 2D Fisher-KPP equation to model cell-sheet wound closure, in: Mathematical Biosciences, June 2014, vol. 252, 15 p.
  
  https://hal.inria.fr/hal-00923588
• 4A. Mottini, X. Descombes, F. Besse.
  
  From Curves to Trees: A Tree-like Shapes Distance Using the Elastic Shape Analysis Framework, in: Neuroinformatics, November 2014, 12 p. [ DOI : 10.1007/s12021-014-9255-0 ]
  
  https://hal.inria.fr/hal-01086777

International Conferences with Proceedings

• 5L. Guignard, C. Godin, U.-M. Fiuza, L. Hufnagel, P. Lemaire, G. Malandain.
  
  Spatio-temporal registration of embryo images, in: ISBI - International Symposium on Biomedical Imaging, Pekin, China, IEEE, April 2014.
  
  https://hal.inria.fr/hal-00919142
• 6G. Michelin, L. Guignard, U.-M. Fiuza, G. Malandain.
  
  Embryo Cell Membranes Reconstruction by Tensor Voting, in: ISBI - International Symposium on Biomedical Imaging, Beijing, China, IEEE, April 2014.
  
  https://hal.inria.fr/hal-00915000
• 7A. Mottini, X. Descombes, F. Besse.
  
  Axonal Tree Classification Using an Elastic Shape Analysis Based Distance, in: ISBI - International Symposium on Biomedical Imaging, Beijing, China, IEEE, April 2014.
  
  https://hal.inria.fr/hal-00920765
• 8A. Mottini, X. Descombes, F. Besse, E. Pechersky.
  
  Discrete Stochastic Model for the Generation of Axonal Trees, in: EMBC 2014, Chicago, United States, August 2014.
  
  https://hal.inria.fr/hal-01060580
• 9E. Poulain, S. Prigent, E. Soubies, X. Descombes.
  
  Cells detection using segmentation competition, in: ISBI - International Symposium on Biomedical Imaging, Brooklyn, United States, IEEE, April 2015.
  
  https://hal.inria.fr/hal-01113167
• 10E. Soubies, L. Blanc-Féraud, S. Schaub, G. Aubert.
  
  A 3D model with shape prior information for biological structures reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy, in: ISBI - International Symposium on Biomedical Imaging, Beijing, China, IEEE, April 2014, pp. 608 - 611. [ DOI : 10.1109/ISBI.2014.6867944 ]
  
  https://hal.inria.fr/hal-00914998
• 11E. Soubies, L. Blanc-Féraud, S. Schaub, G. Aubert.
  
  Sparse reconstruction from Multiple-Angle Total Internal Reflection Fluorescence Microscopy, in: ICIP - International Conference on Image Processing, Paris, France, IEEE, October 2014. [ DOI : 10.1109/ICIP.2014.7025575 ]
  
  https://hal.inria.fr/hal-01037895
• 12H.-F. Yang, X. Descombes, S. Prigent, G. Malandain, X. Druart, F. Plouraboué.
  
  Head Tracking and Flagellum Tracing for Sperm Motility Analysis, in: ISBI - International Symposium on Biomedical Imaging, Beijing, China, IEEE, April 2014.
  
  https://hal.inria.fr/hal-00909868
• 13A. Zubiolo, B. André, E. Debreuve, G. Malandain.
  
  A Recursive Approach For Multiclass Support Vector Machine: Application to Automatic Classification of Endomicroscopic Videos, in: VISAPP - International Conference on Computer Vision Theory and Applications, Lisbon, Portugal, January 2014.
  
  https://hal.inria.fr/hal-00905382

Conferences without Proceedings

• 14G. Michelin, L. Guignard, U.-M. Fiuza, P. Lemaire, C. Godin, G. Malandain.
  
  Cell Pairings for Ascidian Embryo Registration, in: ISBI - International Symposium on Biomedical Imaging, New York, United States, April 2015.
  
  https://hal.inria.fr/hal-01113166

Scientific Books (or Scientific Book chapters)

• 15E. Soubies, P. Weiss, X. Descombes.
  
  Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging, in: Pattern Recognition Applications and Methods, Advances in Intelligent Systems and Computing, Springer-Verlag, 2015, vol. 318, pp. 153-170. [ DOI : 10.1007/978-3-319-12610-4_10 ]
  
  https://hal.inria.fr/hal-01088384

Other Publications

• 16E. Soubies, L. Blanc-Féraud, G. Aubert.
  
  A Continuous Exact l0 penalty (CEL0) for least squares regularized problem, January 2015.
  
  https://hal.inria.fr/hal-01102492
• 17H.-F. Yang, C.-S. Chen, X. Descombes.
  
  Detection and Tracking of Golgi Outposts in Microscopy Data, February 2015, ISBI - International Symposium on Biomedical Imaging.
  
  https://hal.inria.fr/hal-01113626

References in notes

• 18M. Breuilly.
  
  Small animal 4D SPECT imaging : assessment of respiratory motion and iodide biodistribution, Université Nice Sophia Antipolis, November 2013.
  
  https://tel.archives-ouvertes.fr/tel-00908962
• 19C. Medioni, M. Ramialison, A. Ephrussi, F. Besse.
  
  Imp promotes axonal remodeling by regulating profilin mRNA during brain development, in: Curr Biol, March 2014, vol. 24, n^o 7, pp. 793-800.
• 20H. Mohimani, M. Babaie-Zadeh, C. Jutten.
  
  A Fast Approach for Overcomplete Sparse Decomposition Based on Smoothed ${\ell }^0$ Norm, in: Signal Processing, IEEE Transactions on, 2009, vol. 57, n^o 1, pp. 289-301.
• 21P. Soille.
  
  Morphological image analysis: principles and applications 2, Springer, 2003.
• 22B. Zeng, D.-L. Zhou.
  
  Topological and Error-Correcting Properties for Symmetry-Protected Topological Order, 2014, arXiv:1407.3413.