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MONC - 2018
MONC - 2018
Project-Team Monc
Team, Visitors, External Collaborators
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
Project-Team Monc
Team, Visitors, External Collaborators
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography


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Bibliography

Major publications by the team in recent years
  • 1S. Benzekry, C. Lamont, D. Barbolosi, L. Hlatky, P. Hahnfeldt.

    Mathematical modeling of tumor-tumor distant interactions supports a systemic control of tumor growth, in: Cancer Research, 2017. [ DOI : 10.1158/0008-5472.CAN-17-0564 ]

    https://hal.inria.fr/hal-01566947
  • 2S. Benzekry, C. Lamont, A. Beheshti, A. Tracz, J. M. Ebos, L. Haltky, P. Hahnfeldt.

    Classical Mathematical Models for Description and Forecast of Experimental Tumor Growth, in: PLoS Computational Biology, August 2014, vol. 10, no 8, e1003800 p. [ DOI : 10.1371/journal.pcbi.1003800 ]

    https://hal.inria.fr/hal-00922553
  • 3S. Benzekry, A. Tracz, M. Mastri, R. Corbelli, D. Barbolosi, J. M. L. Ebos.

    Modeling Spontaneous Metastasis following Surgery: An In Vivo-In Silico Approach, in: Cancer Research, February 2016, vol. 76, no 3, pp. 535 - 547. [ DOI : 10.1158/0008-5472.CAN-15-1389 ]

    https://hal.inria.fr/hal-01222046
  • 4D. Bresch, T. Colin, E. Grenier, B. Ribba, O. Saut.

    Computational Modeling Of Solid Tumor Growth: The Avascular Stage, in: SIAM Journal on Scientific Computing, August 2010, vol. 32, no 4, pp. 2321–2344.
  • 5T. Colin, F. Cornelis, J. Jouganous, J. Palussière, O. Saut.

    Patient specific simulation of tumor growth, response to the treatment and relapse of a lung metastasis: a clinical case, in: Journal of Computational Surgery, 2015, 18 p. [ DOI : 10.1186/s40244-014-0014-1 ]

    https://hal.inria.fr/hal-01102586
  • 6O. Gallinato, C. Poignard.

    Superconvergent second order Cartesian method for solving free boundary problem for invadopodia formation, in: Journal of Computational Physics, June 2017, vol. 339, pp. 412 - 431. [ DOI : 10.1016/j.jcp.2017.03.010 ]

    https://hal.inria.fr/hal-01483484
  • 7D.-C. Imbs, R. El Cheikh, A. Boyer, J. Ciccolini, C. Mascaux, B. Lacarelle, F. Barlesi, D. Barbolosi, S. Benzekry.

    Revisiting bevacizumab + cytotoxics scheduling using mathematical modeling: proof of concept study in experimental non-small cell lung carcinoma, in: CPT: Pharmacometrics and Systems Pharmacology, 2018, pp. 1-9. [ DOI : 10.1002/psp4.12265 ]

    https://hal.inria.fr/hal-01624423
  • 8G. Lefebvre, F. Cornelis, P. Cumsille, T. Colin, C. Poignard, O. Saut.

    Spatial modelling of tumour drug resistance: the case of GIST liver metastases Mathematical Medicine and Biology Advance, in: Mathematical Medicine and Biology, 2016, vol. 00, pp. 1 - 26. [ DOI : 10.1093/imammb/dqw002 ]

    https://hal.inria.fr/hal-01380292
  • 9M. Leguebe, A. Silve, L. M. Mir, C. Poignard.

    Conducting and permeable states of cell membrane submitted to high voltage pulses: Mathematical and numerical studies validated by the experiments, in: Journal of Theoretical Biology, November 2014, vol. 360, pp. 83-94. [ DOI : 10.1016/j.jtbi.2014.06.027 ]

    https://hal.inria.fr/hal-01027477
  • 10F. Raman, E. Scribner, O. Saut, C. Wenger, T. Colin, H. M. Fathallah-Shaykh.

    Computational Trials: Unraveling Motility Phenotypes, Progression Patterns, and Treatment Options for Glioblastoma Multiforme, in: PLoS ONE, January 2016, vol. 11, no 1. [ DOI : 10.1371/journal.pone.0146617 ]

    https://hal.inria.fr/hal-01396271
Publications of the year

Articles in International Peer-Reviewed Journals

  • 11A. Andreychenko, B. Denis De Senneville, R. Navest, R. Tijssen, J. Lagendijk, A. Van Den Berg.

    Respiratory motion model based on the noise covariance matrix of a receive array, in: Magnetic Resonance in Medicine, March 2018, vol. 79, no 3, pp. 1730-1735.

    https://hal.archives-ouvertes.fr/hal-01962483
  • 12P. Bour, V. Ozenne, F. Marquet, B. Denis De Senneville, E. Dumont, B. Quesson.

    Real-time 3D ultrasound based motion tracking for the treatment of mobile organs with MR-guided high-intensity focused ultrasound, in: International Journal of Hyperthermia, April 2018, vol. 34, no 8, pp. 1225-1235.

    https://hal.archives-ouvertes.fr/hal-01962473
  • 13T. Colin, G. Dechristé, J. Fehrenbach, L. Guillaume, V. Lobjois, C. Poignard.

    Experimental estimation of stored stress within spherical microtissues: What can and cannot be inferred from cutting experiments, in: Journal of Mathematical Biology, 2018, vol. 77, no 4.

    https://hal.inria.fr/hal-01782340
  • 14A. Collin, S. Imperiale.

    Mathematical analysis and 2-scale convergence of a heterogeneous microscopic bidomain model, in: Mathematical Models and Methods in Applied Sciences, 2018.

    https://hal.inria.fr/hal-01759914
  • 15G. Dechristé, J. Fehrenbach, E. Griseti, V. Lobjois, C. Poignard.

    Viscoelastic modeling of the fusion of multicellular tumor spheroids in growth phase, in: Journal of Theoretical Biology, October 2018, vol. 454, pp. 102-109. [ DOI : 10.1016/j.jtbi.2018.05.005 ]

    https://hal.inria.fr/hal-01786027
  • 16M. Deville, R. Natalini, C. Poignard.

    A continuum mechanics model of enzyme-based tissue degradation in cancer therapies, in: Bulletin of Mathematical Biology, 2018. [ DOI : 10.1007/s11538-018-0515-2 ]

    https://hal.inria.fr/hal-01889575
  • 17C. Ferrer, L. Bartels, M. van Stralen, B. Denis De Senneville, C. T. Moonen, C. Bos.

    Fluid filling of the digestive tract for improved proton resonance frequency shift-based MR thermometry in the pancreas, in: Journal of Magnetic Resonance Imaging, March 2018, vol. 47, no 3, pp. 692-701.

    https://hal.archives-ouvertes.fr/hal-01962478
  • 18A. Hocquelet, T. Auriac, C. Perier, C. Dromain, M. Meyer, J.-B. Pinaquy, A. Denys, H. Trillaud, B. Denis De Senneville, V. Vendrely.

    Pre-treatment magnetic resonance-based texture features as potential imaging biomarkers for predicting event free survival in anal cancer treated by chemoradiotherapy, in: European Radiology, July 2018, vol. 28, no 7, pp. 2801-2811. [ DOI : 10.1007/s00330-017-5284-z ]

    https://hal.archives-ouvertes.fr/hal-01962472
  • 19D.-C. Imbs, R. El Cheikh, A. Boyer, J. Ciccolini, C. Mascaux, B. Lacarelle, F. Barlesi, D. Barbolosi, S. Benzekry.

    Revisiting bevacizumab + cytotoxics scheduling using mathematical modeling: proof of concept study in experimental non-small cell lung carcinoma, in: CPT: Pharmacometrics and Systems Pharmacology, 2018, pp. 1-9. [ DOI : 10.1002/psp4.12265 ]

    https://hal.inria.fr/hal-01624423
  • 20T. Michel, J. Fehrenbach, V. Lobjois, J. Laurent, A. Gomes, T. Colin, C. Poignard.

    Mathematical Modeling of the Proliferation Gradient in MultiCellular Tumor Spheroids, in: Journal of Theoretical Biology, December 2018, vol. 458, pp. 133 - 147. [ DOI : 10.1016/j.jtbi.2018.08.031 ]

    https://hal.inria.fr/hal-01883189
  • 21P. Mistani, A. Guittet, C. Poignard, F. Gibou.

    A Parallel Voronoi-Based Approach for Mesoscale Simulations of Cell Aggregate Electropermeabilization, in: Journal of Computational Physics, January 2019, https://arxiv.org/abs/1802.01781 - 21 pages, 16 figures, submitted. [ DOI : 10.1016/j.jcp.2018.12.009 ]

    https://hal.inria.fr/hal-01779598
  • 22A. Rodallec, S. Benzekry, B. Lacarelle, J. Ciccolini, R. Fanciullino.

    Pharmacokinetics variability: why nanoparticles are not magic bullets in oncology, in: Critical Reviews in Oncology/Hematology, September 2018, vol. 129, pp. 1 - 12. [ DOI : 10.1016/j.critrevonc.2018.06.008 ]

    https://hal.inria.fr/hal-01821678
  • 23A. Rodallec, G. Sicard, R. Fanciullino, S. Benzekry, B. Lacarelle, G. Milano, J. Ciccolini.

    Turning cold tumors into hot tumors: harnessing the potential of tumor immunity using nanoparticles, in: Expert Opinion on Drug Metabolism and Toxicology, October 2018, vol. 14, no 11, pp. 1-9. [ DOI : 10.1080/17425255.2018.1540588 ]

    https://hal.inria.fr/hal-01958583
  • 24D. Voyer, A. Silve, L. M. Mir, R. Scorretti, C. Poignard.

    Dynamical modeling of tissue electroporation, in: Bioelectrochemistry, March 2018, vol. 119, pp. 98 - 110. [ DOI : 10.1016/j.bioelechem.2017.08.007 ]

    https://hal.inria.fr/hal-01598846
  • 25C. Zhang, A. Collin, P. Moireau, A. Trouvé, M. Rochoux.

    Front shape similarity measure for data-driven simulations of wildland fire spread based on state estimation: Application to the RxCADRE field-scale experiment, in: Proceedings of the Combustion Institute, 2019, vol. 37, no 3, pp. 4201-4209. [ DOI : 10.1016/j.proci.2018.07.112 ]

    https://hal.inria.fr/hal-01969130

Invited Conferences

  • 26S. Benzekry.

    Mathematical Modeling and Prediction of Clinical Metastasis, in: Mathematical Challenges in the Analysis of Continuum Models for Cancer Growth, Evolution and Therapy, Oaxaca, Mexico, November 2018.

    https://hal.inria.fr/hal-01969108
  • 27S. Benzekry.

    Mathematical Modeling of Tumor-Tumor Distant Interactions Supports a Systemic Control of Tumor Growth, in: 3rd Mathematical Biology Modeling days of Besançon, Besançon, France, June 2018.

    https://hal.inria.fr/hal-01969102
  • 28S. Benzekry.

    Mechanistic modeling of metastasis: cancer at the organism scale, in: Mathematical Models in Cancer, Vienna, Austria, July 2018.

    https://hal.inria.fr/hal-01969104
  • 29S. Benzekry.

    Optimization of sequential administration of bevacizumab plus cytotoxics in non-small cell lung cancer by combining in vivo experiments and mathematical modeling, in: Mathematical perspectives in the biology and therapeutics of cancer, Marseille, France, July 2018.

    https://hal.inria.fr/hal-01969142

Conferences without Proceedings

  • 30P. Bour, V. Ozenne, F. Marquet, B. Denis De Senneville, E. Dumont, B. Quesson.

    Evaluation of 2D simultaneous multi-slice EPI at 1.5T for MR-thermometry in presence of motion, in: International Society of Magnetic Resonance in Medicine, Paris, France, June 2018.

    https://hal.archives-ouvertes.fr/hal-01963259
  • 31B. Denis De Senneville, A. Novell, C. J. Arthuis, V. Mendes, P.-A. Dujardin, F. Patat, A. Bouakaz, J.-M. Escoffre, F. Perrotin.

    A fluid dynamic model for quantitative contrast-enhanced ultrasound imaging: validation for the assessment of uteroplacental perfusion, in: IEEE International Ultrasonics Symposium, Kobe, Japan, October 2018.

    https://hal.archives-ouvertes.fr/hal-01963238
  • 32A. Gérard, A. Collin, Y. Coudière.

    Validation of a sequential data assimilation method applied to cardiac electrophysiology, in: Virtual Physiological Human conference, Saragosse, Spain, September 2018.

    https://hal.inria.fr/hal-01955627
  • 33V. Ozenne, P. Bour, B. Denis De Senneville, M. Delcey, W. Ben Hassen, A. Vaussy, S. Rainer, B. Quesson.

    3D ultrasound based motion tracking combined with rapid multislice MR-thermometry for MR guided HIFU on mobile organs, in: International Society of Magnetic Resonance in Medicine, Paris, France, June 2018.

    https://hal.archives-ouvertes.fr/hal-01963275
  • 34C. Zachiu, B. Denis De Senneville, M. Ries, F. Prins, B. Raaymakers.

    Non-rigid CT to MR registration for online external beam radiotherapy guidance, in: 6th MR in RT symposium, Utrecht, Netherlands, June 2018.

    https://hal.archives-ouvertes.fr/hal-01963230

Internal Reports

Other Publications

  • 36M. Bilous, C. Serdjebi, A. Boyer, P. Tomasini, C. Pouypoudat, D. Barbolosi, F. Barlesi, F. Chomy, S. Benzekry.

    Computational modeling reveals dynamics of brain metastasis in non-small cell lung cancer and provides a tool for personalized therapy, November 2018, working paper or preprint.

    https://hal.inria.fr/hal-01928442
  • 37A. Crombé, C. Perier, M. Kind, B. Denis De Senneville, F. Le Loarer, A. Italiano, X. Buy, O. Saut.

    T2-based MRI Delta-Radiomics Improve Response Prediction in Soft-Tissue Sarcomas Treated by Neoadjuvant Chemotherapy, November 2018, working paper or preprint.

    https://hal.inria.fr/hal-01929807
  • 38M. Mastri, C. Perier, G. Macgrogan, J. M. Ebos, S. Benzekry.

    A biologically-based mathematical model for prediction of metastatic relapse, August 2018, 17th Biennial Congress of the Metastasis Research Society, Poster.

    https://hal.inria.fr/hal-01968980
  • 39C. Nicolò, M. Mastri, A. Tracz, J. M. Ebos, S. Benzekry.

    Mathematical modeling of differential effects of neo-adjuvant Sunitinib on primary tumor and metastatic growth, April 2018, vol. 78, no 13 Supplement, 4264 p, AACR Annual Meeting 2018, Poster. [ DOI : 10.1158/1538-7445.AM2018-4264 ]

    https://hal.inria.fr/hal-01968917
  • 40B. Schneider, A. Boyer, J. Ciccolini, K. Wang, M. E. Fernandez-Zapico, J. Mochel, S. Benzekry.

    Modeling Primary Tumor Dynamics of Human-to-Mouse Xenografted Non-Small Cell Lung Cancer in Response to Administration of Bevacizumab and Pemetrexed-Cisplatin, May 2018, Population Approach Group in Europe (PAGE) Meeting 2018, Poster.

    https://hal.inria.fr/hal-01968942
  • 41C. Vaghi, A. Rodallec, R. Fanciullino, J. Ciccolini, C. Poignard, S. Benzekry.

    Improving the efficacy of anti-cancer nanoparticles with data-driven mathematical modeling, June 2018, Data Science Summer School, Poster.

    https://hal.inria.fr/hal-01968959


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