Bibliography

Major publications by the team in recent years

• 1N. Bajeux, F. Grognard, L. Mailleret.
  
  Augmentative biocontrol when natural enemies are subject to Allee effects, in: Journal of Mathematical Biology, 2017, vol. 74, n^o 7, pp. 1561 - 1587. [ DOI : 10.1007/s00285-016-1063-8 ]
  
  https://hal.archives-ouvertes.fr/hal-01402250
• 2C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
  
  DRUM: A New Framework for Metabolic Modeling under Non-Balanced Growth. Application to the Carbon Metabolism of Unicellular Microalgae, in: PLoS ONE, August 2014, vol. 9, n^o 8, e104499. [ DOI : 10.1371/journal.pone.0104499 ]
  
  https://hal.inria.fr/hal-01097327
• 3O. Bernard.
  
  Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, n^o 10, pp. 1378–1389. [ DOI : 10.1016/j.jprocont.2011.07.012 ]
  
  http://hal.inria.fr/hal-00848385
• 4V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.
  
  The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, n^o 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]
  
  https://hal.inria.fr/hal-01084299
• 5N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
  
  Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies, in: PLoS Computational Biology, March 2016, vol. 12, n^o 3, e1004802. [ DOI : 10.1371/journal.pcbi.1004802 ]
  
  https://hal.inria.fr/hal-01332394
• 6N. Go, C. Bidot, C. Belloc, S. Touzeau.
  
  Integrative Model of the Immune Response to a Pulmonary Macrophage Infection: What Determines the Infection Duration?, in: PLoS ONE, September 2014, vol. 9, n^o 9, e107818. [ DOI : 10.1371/journal.pone.0107818 ]
  
  https://hal.inria.fr/hal-01099937
• 7F. Mairet, O. Bernard, P. Masci, T. Lacour, A. Sciandra.
  
  Modelling neutral lipid production by the microalga Isochrysis affinis galbana under nitrogen limitation, in: Biores. Technol., 2011, vol. 102, pp. 142-149.
  
  http://dx.doi.org/10.1016/j.biortech.2010.06.138
• 8M. Moisan, O. Bernard, J.-L. Gouzé.
  
  Near optimal interval observers bundle for uncertain bioreactors, in: Automatica, January 2009, vol. 45, n^o 1, pp. 291–295. [ DOI : 10.1016/j.automatica.2008.07.006 ]
  
  https://hal.archives-ouvertes.fr/hal-01109396
• 9C. Poignard, M. Chaves, J.-L. Gouzé.
  
  Periodic Oscillations for Non Monotonic Smooth Negative Feedback Circuits, in: SIAM Journal on Applied Dynamical Systems, 2016, vol. 15, n^o 1, pp. 257–286. [ DOI : 10.1137/15M1033368 ]
  
  https://hal.archives-ouvertes.fr/hal-01242157
• 10L. Tournier, M. Chaves.
  
  Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, n^o 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]
  
  http://hal.inria.fr/hal-00848450

Publications of the year

Doctoral Dissertations and Habilitation Theses

• 11L. G. Pereira.
  
  Modeling cell response heterogeneity to pro-apoptotic ligands, Université Côte d'Azur, November 2019.
• 12C. M. von Dossow.
  
  Modélisation, analyse et contrôle de la croissance microalgale en cultures à haute densité, Sorbonne Université, May 2019.

Articles in International Peer-Reviewed Journals

• 13s. Almeida, M. Chaves, F. Delaunay.
  
  Transcription-based circadian mechanism controls the duration of molecular clock states in response to signaling inputs, in: Journal of Theoretical Biology, January 2020, vol. 484, 110015 p. [ DOI : 10.1016/j.jtbi.2019.110015 ]
  
  https://hal.archives-ouvertes.fr/hal-02299359
• 14N. Bajeux, F. Grognard, L. Mailleret.
  
  Influence of the components of propagule pressure, Allee effects, and stochasticity on the time to establish introduced populations, in: Journal of Theoretical Biology, June 2019, vol. 471, pp. 91-107. [ DOI : 10.1016/j.jtbi.2019.03.012 ]
  
  https://hal.inria.fr/hal-02139554
• 15V. Baldazzi, P. Valsesia, M. Génard, N. Bertin.
  
  Organ-wide and ploidy-dependent regulation both contribute to cell-size determination: evidence from a computational model of tomato fruit, in: Journal of Experimental Botany, November 2019, vol. 70, n^o 21, pp. 6215-6228. [ DOI : 10.1093/jxb/erz398 ]
  
  https://hal.inria.fr/hal-02407512
• 16C. Bresch, L. Carlesso, R. Suay, L. Van Oudenhove, S. Touzeau, H. Fatnassi, L. Ottenwaelder, B. Paris, C. Poncet, L. Mailleret, G. J. Messelink, P. Parolin.
  
  In search of artificial domatia for predatory mites, in: Biocontrol Science and Technology, February 2019, vol. 29, n^o 2. [ DOI : 10.1080/09583157.2018.1540030 ]
  
  https://hal.inria.fr/hal-01947693
• 17V. Calcagno, F. M. Hamelin, L. Mailleret, F. Grognard.
  
  How optimal foragers should respond to habitat changes: on the consequences of habitat conversion, in: Theoretical Ecology, August 2019. [ DOI : 10.1007/s12080-019-00437-7 ]
  
  https://hal.inria.fr/hal-02392973
• 18L. Chambon, I. Belgacem, J.-L. Gouzé.
  
  Qualitative control of undesired oscillations in a genetic negative feedback loop with uncertain measurements, in: Automatica, 2019, vol. 112, 108642 p, forthcoming. [ DOI : 10.1016/j.automatica.2019.108642 ]
  
  https://hal.inria.fr/hal-02418421
• 19M. Chaves, D. A. Oyarzun.
  
  Dynamics of complex feedback architectures in metabolic pathways, in: Automatica, January 2019, vol. 99, pp. 323 - 332. [ DOI : 10.1016/j.automatica.2018.10.046 ]
  
  https://hal.archives-ouvertes.fr/hal-01936242
• 20M. Chaves, D. A. Oyarzun, J.-L. Gouzé.
  
  Analysis of a genetic-metabolic oscillator with piecewise linear models, in: Journal of Theoretical Biology, February 2019, vol. 462, pp. 259 - 269. [ DOI : 10.1016/j.jtbi.2018.10.026 ]
  
  https://hal.archives-ouvertes.fr/hal-01936225
• 21R. De-Luca, F. Bezzo, Q. Béchet, O. Bernard.
  
  Meteorological Data-Based Optimal Control Strategy for Microalgae Cultivation in Open Pond Systems, in: Complexity, January 2019, vol. 2019, pp. 1-12. [ DOI : 10.1155/2019/4363895 ]
  
  https://hal.inria.fr/hal-02427401
• 22D. Demory, A.-C. Baudoux, A. Monier, N. Simon, C. Six, P. Ge, F. Rigaut-Jalabert, D. Marie, A. Sciandra, O. Bernard, S. Rabouille.
  
  Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean, in: The ISME journal, January 2019, vol. 13, n^o 1, pp. 132-146. [ DOI : 10.1038/s41396-018-0248-0 ]
  
  https://hal.sorbonne-universite.fr/hal-01973977
• 23A. Fanesi, A. Paule, O. Bernard, R. Briandet, F. Lopes.
  
  The architecture of monospecific microalgae biofilms 2, in: Microorganisms, 2019, vol. 7, n^o 9, 352 p. [ DOI : 10.3390/microorganisms7090352 ]
  
  https://hal.inria.fr/hal-02422042
• 24N. Go, C. Belloc, C. Bidot, S. Touzeau.
  
  Why, when and how should exposure be considered at the within-host scale? A modelling contribution to PRRSv infection, in: Mathematical Medicine and Biology, 2019, vol. 36, n^o 2, pp. 179-206. [ DOI : 10.1093/imammb/dqy005 ]
  
  https://hal.inria.fr/hal-01947667
• 25N. Go, S. Touzeau, Z. Islam, C. Belloc, A. Doeschl-Wilson.
  
  How to prevent viremia rebound? Evidence from a PRRSv data-supported model of immune response, in: BMC Systems Biology, January 2019, vol. 13, 15 p. [ DOI : 10.1186/s12918-018-0666-7 ]
  
  https://hal.inria.fr/hal-01999499
• 26J. Grenier, H. Bonnefond, F. Lopes, O. Bernard.
  
  The impact of light supply to photosynthetic moving biofilms, in: Algal Research - Biomass, Biofuels and Bioproducts, December 2019, vol. 44, n^o 101674. [ DOI : 10.1016/j.algal.2019.101674 ]
  
  https://hal.archives-ouvertes.fr/hal-02292367
• 27G. Koch, G. Rolland, M. Dauzat, A. Bediée, V. Baldazzi, N. Bertin, Y. Guédon, C. Granier.
  
  Leaf Production and Expansion: A Generalized Response to Drought Stresses from Cells to Whole Leaf Biomass—A Case Study in the Tomato Compound Leaf, in: Plants, October 2019, vol. 8, n^o 10, 409 p. [ DOI : 10.3390/plants8100409 ]
  
  https://hal.inria.fr/hal-02407529
• 28P.-O. Lamare, N. Aguillon, J. Sainte-Marie, J. Grenier, H. Bonnefond, O. Bernard.
  
  Gradient-based optimization of a rotating algal biofilm process, in: Automatica, July 2019, vol. 105, pp. 80-88. [ DOI : 10.1016/j.automatica.2019.02.043 ]
  
  https://hal.inria.fr/hal-02422853
• 29J. J. Lamb, O. Bernard, S. Sarker, K. M. Lien, D. R. Hjelme.
  
  Perspectives of optical colourimetric sensors for anaerobic digestion, in: Renewable and Sustainable Energy Reviews, September 2019, vol. 111, pp. 87-96. [ DOI : 10.1016/j.rser.2019.04.083 ]
  
  https://hal.inria.fr/hal-02421946
• 30J. J. Lamb, O. Bernard, S. Sarker, K. M. Lien, D. Roar Hjelme.
  
  Perspectives of surface plasmonic resonance optical fibre sensors for anaerobic digestion, in: Engineering in Life Sciences, November 2019, vol. 19, n^o 11, pp. 759-769. [ DOI : 10.1002/elsc.201900063 ]
  
  https://hal.inria.fr/hal-02421874
• 31F. Mairet, O. Bernard.
  
  Twelve quick tips for designing sound dynamical models for bioprocesses, in: PLoS Computational Biology, August 2019, vol. 15, n^o 8, e1007222. [ DOI : 10.1371/journal.pcbi.1007222 ]
  
  https://hal.inria.fr/hal-02421763
• 32C. Martínez, F. Mairet, L. Meier, D. Jeison, A. Avila.
  
  Modeling and analysis of an Absorption Column Connected to a Microalgae Culture, in: SIAM Journal on Applied Mathematics, 2020, forthcoming.
  
  https://hal.archives-ouvertes.fr/hal-02432325
• 33L. Mignerot, C. Nagasato, A. F. Peters, M.-M. Perrineau, D. Scornet, F. Pontheaux, W. Djema, Y. Badis, T. Motomura, C. Susana M., J. M. Cock.
  
  Unusual Patterns of Mitochondrial Inheritance in the Brown Alga Ectocarpus, in: Molecular Biology and Evolution, 2019, forthcoming. [ DOI : 10.1093/molbev/msz186 ]
  
  https://hal.archives-ouvertes.fr/hal-02269449
• 34M. Morales, A. Hélias, O. Bernard.
  
  Optimal integration of microalgae production with photovoltaic panels: environmental impacts and energy balance, in: Biotechnology for Biofuels, December 2019, vol. 12, n^o 1. [ DOI : 10.1186/s13068-019-1579-4 ]
  
  https://hal.inria.fr/hal-02421845
• 35T. Morel-Journel, C. Rais Assa, L. Mailleret, E. Vercken.
  
  Its all about connections: hubs and invasion in habitat networks, in: Ecology Letters, February 2019. [ DOI : 10.1111/ele.13192 ]
  
  https://hal.inria.fr/hal-01957100
• 36E. Rousseau, M. Bonneault, F. Fabre, B. Moury, L. Mailleret, F. Grognard.
  
  Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance, in: Philosophical Transactions of the Royal Society B: Biological Sciences, June 2019, vol. 374, n^o 1775. [ DOI : 10.1098/rstb.2018.0263 ]
  
  https://hal.inria.fr/hal-02149025
• 37J.-A. Sepulchre, S. Reverchon, J.-L. Gouzé, W. Nasser.
  
  Modeling the bioconversion of polysaccharides in a continuous reactor: A case study of the production of oligo-galacturonates by Dickeya dadantii, in: Journal of Biological Chemistry, February 2019, vol. 294, n^o 5, pp. 1753-1762. [ DOI : 10.1074/jbc.RA118.004615 ]
  
  https://hal.inria.fr/hal-01952846
• 38B. D. Shoener, S. M. Schramm, F. Béline, O. Bernard, C. Martínez, B. G. Plosz, S. Snowling, J.-P. Steyer, B. Valverde-Pérez, D. Wagner, J. S. Guest.
  
  Microalgae and cyanobacteria modeling in water resource recovery facilities: A critical review, in: Water Research X, 2019, 18 p. [ DOI : 10.1016/j.wroa.2018.100024 ]
  
  https://hal.archives-ouvertes.fr/hal-02268495
• 39I. Yegorov, F. Grognard, L. Mailleret, F. Halkett, P. Bernhard.
  
  A dynamic game approach to uninvadable strategies for biotrophic pathogens, in: Dynamic Games and Applications, March 2019. [ DOI : 10.1007/s13235-019-00307-1 ]
  
  https://hal.inria.fr/hal-02147836
• 40I. Yegorov, F. Mairet, H. De Jong, J.-L. Gouzé.
  
  Optimal control of bacterial growth for the maximization of metabolite production, in: Journal of Mathematical Biology, 2019, vol. 78, n^o 4, pp. 985–1032. [ DOI : 10.1007/s00285-018-1299-6 ]
  
  https://hal.inria.fr/hal-01929475

Invited Conferences

• 41L. Mailleret.
  
  Pulsed perturbations in population dynamics, in: Modelife days - Journées de Modélisation, physique et mathématique du vivant, Mandelieu, France, November 2019.
  
  https://hal.inria.fr/hal-02393308
• 42L. Mailleret, S. Nilusmas, S. Touzeau, V. Calcagno, C. Djian-Caporalino, P. Castagnone-Sereno.
  
  A demo-genetic model of root-knot nematod dynamics with applications to the deployment of plant resistance, in: Journée MODECO - Modélisation des Dynamiques Ecologiques, Nice, France, July 2019.
  
  https://hal.inria.fr/hal-02393318
• 43S. Touzeau.
  
  Modélisation et contrôle en épidémiologie de cultures tropicales : application aux nématodes phytoparasites du bananier plantain et aux scolytes du caféier, in: AgriNumA'2019 - Symposium Agriculture Numérique en Afrique, Dakar, Senegal, April 2019.
  
  https://hal.inria.fr/hal-02364583

International Conferences with Proceedings

• 44S. Almeida, M. Chaves, F. Delaunay.
  
  Period Control of the Coupled Clock and Cell Cycle Systems, in: 10th International Conference on Computational Systems-Biology and Bioinformatics, Nice, France, 2019.
  
  https://hal.archives-ouvertes.fr/hal-02386398
• 45O. Bara, H. Bonnefond, O. Bernard.
  
  Model Development and Light Effect on a Rotating Algal Biofilm, in: DYCOPS 2019 - 12th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, Florianópolis - SC, Brazil, April 2019.
  
  https://hal.inria.fr/hal-01891661
• 47L. Chambon, J.-L. Gouzé.
  
  Global asymptotic stability of a genetic negative feedback loop with an affine control, in: CDC 2019 - 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
  
  https://hal.inria.fr/hal-02418431
• 48L. Chambon, J.-L. Gouzé.
  
  Global stabilization of a genetic positive feedback loop via the design of a synthetic auto-repression, in: FOSBE2019 - 8th IFAC Conference on Foundations of Systems Biology in Engineering, Valencia, Spain, October 2019.
  
  https://hal.inria.fr/hal-02418438
• 49M. Chaves, L. Scardovi, E. Firippi.
  
  Coupling and synchronization of piecewise linear genetic regulatory systems, in: 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
  
  https://hal.archives-ouvertes.fr/hal-02386348
• 50E. Cinquemani, F. Mairet, I. Yegorov, H. De Jong, J.-L. Gouzé.
  
  Optimal control of bacterial growth for metabolite production: The role of timing and costs of control, in: ECC 2019 - 18th European Control Conference, Naples, Italy, IEEE, June 2019, pp. 2657-2662. [ DOI : 10.23919/ECC.2019.8796079 ]
  
  https://hal.inria.fr/hal-02384034
• 51W. Djema, O. Bernard, L. Giraldi.
  
  Turnpike Features in Optimal Selection of Microalgae, in: 8 th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE 2019 - IFAC), Valencia, Spain, October 2019.
  
  https://hal.inria.fr/hal-02422868
• 52W. Djema, L. Giraldi, O. Bernard.
  
  An Optimal Control Strategy Separating Two Species of Microalgae in Photobioreactors, in: DYCOPS 2019 - 12th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, Florianopolis, Brazil, April 2019.
  
  https://hal.inria.fr/hal-01891910
• 53A. Dos Reis De Souza, D. Efimov, A. Polyakov, J.-L. Gouzé.
  
  Robust Control of a Competitive Environment in the Chemostat using Discontinuous Control Laws, in: CDC 2019 - 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
  
  https://hal.inria.fr/hal-02308076
• 54A. Dos Reis De Souza, J.-L. Gouzé, A. Polyakov, D. Efimov.
  
  On Adaptive Estimation of Bacterial Growth in the Competitive Chemostat, in: 11th IFAC Nonlinear Control Systems (NOLCOS), Vienne, Austria, September 2019.
  
  https://hal.inria.fr/hal-02416265
• 55D. Figueiredo, E. Rocha, M. A. Martins, M. Chaves.
  
  rPrism -A software for reactive weighted state transition models, in: 6th International Workshop, Hybrid Systems Biology, Prague, Czech Republic, 2019, pp. 165 - 174.
  
  https://hal.archives-ouvertes.fr/hal-02386381
• 56E. Firippi, M. Chaves.
  
  Period -control in a coupled system of two genetic oscillators for synthetic biology, in: 8th IFAC Conference on Foundations of Systems Biology in Engineering, Valencia, Spain, 2019.
  
  https://hal.archives-ouvertes.fr/hal-02386364
• 57A. G. Yabo, J.-B. Caillau, J.-L. Gouzé.
  
  Singular regimes for the maximization of metabolite production, in: CDC 2019 - 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
  
  https://hal.inria.fr/hal-02418444

Conferences without Proceedings

• 58H. Bonnefond, Y. Lie, E. Pruvost, A. Talec, O. Bernard, A. Sciandra.
  
  Improvement of microalgae strains by dynamic darwinian selection pressure, in: Alg'in Provence - European Workshop, Arles, France, October 2019.
  
  https://hal.archives-ouvertes.fr/hal-02368717
• 59C. Djuikem, F. Grognard, S. Touzeau, S. Bowong.
  
  Modelling and controlling fungus Hemileia vastatrix, a coffee pest, in: BIOMATH 2019 - International Conference on Mathematical Methods and Models in Biosciences - Biomath 2019, Bedlewo, Poland, June 2019.
  
  https://hal.inria.fr/hal-02309454
• 60Y. Fotso Fotso, F. Grognard, S. Touzeau, B. Tsanou, S. Bowong.
  
  Optimal control on a simple model of coffee berry borer infestation, in: BIOMATH 2019 - International Conference on Mathematical Methods and Models in Biosciences, Bedlewo, Poland, June 2019.
  
  https://hal.inria.fr/hal-02309445
• 61F. Grognard, P. Clin, F. Val, F. M. Hamelin.
  
  Taking advantage of pathogen diversity and plant immunity to minimize disease prevalence, in: CMPD5 - Computational and Mathematical Population Dynamics, Fort Lauderdale, United States, May 2019.
  
  https://hal.inria.fr/hal-02139538
• 62F. Grognard, I. Tankam Chedjou, Y. Fotso Fotso, S. Touzeau.
  
  Modelling, control, and optimization for tropical agriculture, in: CMPD5 - Computational and Mathematical Population Dynamics, Fort Lauderdale, United States, May 2019.
  
  https://hal.inria.fr/hal-02139546
• 63F. Guihéneuf, A. Sciandra, O. Bernard, H. Bonnefond.
  
  Recent advances in microalgal biotechnology with an emphasis on biofilm cultivation, in: EPC7 - 7th European Phycological Congress, Zagreb, Croatia, August 2019.
  
  https://hal.archives-ouvertes.fr/hal-02368789
• 64H. Kanso, B. Quilot-Turion, M.-M. Memah, O. Bernard, J.-L. Gouzé, V. Baldazzi.
  
  A reduction strategy to simplify a model of sugar metabolism for application to a large panel of genotypes, in: 8th Conference on Foundations of Systems Biology in Engineering -FOSBE19, Valencia, Spain, IFAC, October 2019.
  
  https://hal.archives-ouvertes.fr/hal-02419377
• 65C. Martínez, F. Mairet, L. Plaza, A. Sciandra, O. Bernard.
  
  Quantifying the potential of microalgae culture systems to remove nutrients from wastewater, in: FOSBE 2019 - 8th IFAC Conference on Foundations of Systems Biology in Engineering, València, Spain, October 2019.
  
  https://hal.archives-ouvertes.fr/hal-02368853
• 66S. Nilusmas, S. Touzeau, V. Calcagno, C. Djian-Caporalino, P. Castagnone-Sereno, L. Mailleret.
  
  A demo-genetic model of root-knot nematod dynamics with applications to the deployment of plant resistance, in: CMPD5 - Computational and Mathematical Population Dynamics, Fort Lauderdale, United States, May 2019.
  
  https://hal.inria.fr/hal-02365103
• 67I. Tankam Chedjou, S. Touzeau, L. Mailleret, F. Grognard, J. J. Tewa.
  
  Agricultural control of Radopholus similis in banana and plantain plantations, in: BIOMATH 2019 - International Conference on Mathematical Methods and Models in Biosciences, Bedlewo, Poland, June 2019.
  
  https://hal.inria.fr/hal-02139560
• 68A. G. Yabo, J.-B. Caillau, J.-L. Gouzé.
  
  Bacterial growth strategies as Optimal Control problems: maximizing metabolite production, in: FGS'2019 19th French-German-Swiss conference on Optimization, Nice, France, September 2019.
  
  https://hal.archives-ouvertes.fr/hal-02421164

Scientific Books (or Scientific Book chapters)

• 69H. Bonnefond, C. Combe, J.-P. Cadoret, A. Sciandra, O. Bernard.
  
  Potentiel des microalgues, in: Chimie verte et industries agroalimentaires - Vers une bioéconomie durable, S. Baumberger (editor), Lavoisier, December 2019, forthcoming.
  
  https://hal.inria.fr/hal-02421830

Books or Proceedings Editing

• 70M. Chaves, M. A. Martins (editors)
  
  Molecular Logic and Computational Synthetic BiologyFirst International Symposium, MLCSB 2018, Santiago, Chile, December 17–18, 2018, Revised Selected Papers, LNCS, Springer, 2019, vol. 11415. [ DOI : 10.1007/978-3-030-19432-1 ]
  
  https://hal.archives-ouvertes.fr/hal-02386442

Internal Reports

• 71P.-O. Lamare, N. Aguillon, J. Sainte-Marie, J. Grenier, H. Bonnefond, O. Bernard.
  
  Gradient-based optimization of a rotating algal biofilm process, Inria - Sophia antipolis, January 2019, n^o RR-9250.
  
  https://hal.inria.fr/hal-01990002

Patents

• 72O. Bernard, H. Bonnefond, A. Sciandra, E. Pruvost, G. M. Grimaud.
  
  Bioreactor for the selection of microalgae, September 2019, n^o 16/335,390, 2019.
  
  https://hal.inria.fr/hal-02422029

Other Publications

• 73W. Djema, O. Bernard, L. Giraldi.
  
  Separating Two Species of Microalgae in Photobioreactors in Minimal Time, December 2019, working paper or preprint.
  
  https://hal.inria.fr/hal-02423370
• 74W. Djema, L. Giraldi, O. Bernard.
  
  Turnpike Features in Optimal Selection ofMicroalgae, December 2019, working paper or preprint.
  
  https://hal.inria.fr/hal-02423373
• 75C. Martínez, F. Mairet, O. Bernard.
  
  Dynamics of the periodically forced light-limited Droop model, December 2019, working paper or preprint.
  
  https://hal.archives-ouvertes.fr/hal-02422838
• 76S. Nilusmas, M. Mercat, T. Perrot, C. Djian-Caporalino, P. Castagnone-Sereno, S. Touzeau, V. Calcagno, L. Mailleret.
  
  A multi-seasonal model of plant-nematode interactions and its use to identify optimal plant resistance deployment strategies, December 2019, working paper or preprint. [ DOI : 10.1101/774869 ]
  
  https://hal.inria.fr/hal-02393028

References in notes

• 77S. Almeida, M. Chaves, F. Delaunay, C. Feillet.
  
  A comprehensive reduced model of the mammalian cell cycle, in: IFAC World Congress 2017, Toulouse, France, July 2017. [ DOI : 10.1016/j.ifacol.2017.08.2204 ]
  
  https://hal.inria.fr/hal-01568507
• 78M. Basan, M. Zhu, X. Dai, M. Warren, D. Sévin, Y. Wang, T. Hwa.
  
  Inflating bacterial cells by increased protein synthesis, in: Mol. Syst. Biol., oct 2015, vol. 11, n^o 10, 836 p.
  
  https://onlinelibrary.wiley.com/doi/abs/10.15252/msb.20156178
• 79M. Caïa, O. Bernard, J.-P. Steyer.
  
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  A kinetic model of sugar metabolism in peach fruit reveals a functional hypothesis of markedly low fructose-to-glucose ratio phenotype, in: Plant Journal, May 2018, vol. 94, n^o 4, pp. 685-698.
  
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  Combinaison de micro habitats artificiels et de ressources alimentaires pour des acariens agents de lutte biologique, Université de Montpellier & Montpellier SupAgroMaster Mention " Biodiversité, Ecologie, Evolution, B2E ", 2019.
• 82N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
  
  Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies, in: PLoS Computational Biology, March 2016, vol. 12, n^o 3, e1004802. [ DOI : 10.1371/journal.pcbi.1004802 ]
  
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• 83J.-L. Gouzé, A. Rapaport, Z. Hadj-Sadok.
  
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  Impact de la capacité de charge de l’environnementsur les dynamiques d’expansions de métapopulations. Théories et applications à un système expérimental hôte-parasitoïde, Université Côte d'Azur, 2019.
• 86M. Haond, T. Morel-Journel, E. Lombaert, E. Vercken, L. Mailleret, L. Roques.
  
  When higher carrying capacities lead to faster propagation, in: Peer Community in Ecology, September 2018.
  
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• 87L. Lardon, A. Hélias, B. Sialve, J.-P. Steyer, O. Bernard.
  
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• 88B. Louis.
  
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• 89L. Mailleret, F. Grognard.
  
  Global stability and optimisation of a general impulsive biological control model, in: Mathematical Biosciences, 2009, vol. 221, n^o 2, pp. 91-100.
  
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• 90C. Martínez, O. Bernard, F. Mairet.
  
  Maximizing microalgae productivity in a light-limited chemostat, in: IFAC-PapersOnLine, 2018, vol. 51, n^o 2, pp. 735 - 740. [ DOI : 10.1016/j.ifacol.2018.04.001 ]
  
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• 91C. Martínez, F. Mairet, O. Bernard.
  
  Theory of turbid microalgae cultures, in: Journal of Theoretical Biology, November 2018, vol. 456, pp. 190 - 200. [ DOI : 10.1016/j.jtbi.2018.07.016 ]
  
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• 92P. Masci, O. Bernard, F. Grognard.
  
  Continuous Selection of the Fastest Growing Species in the Chemostat, in: Proceedings of the IFAC conference, Seoul, Korea, 2008.
• 93M. Morales, P. Collet, L. Lardon, A. Hélias, J.-P. Steyer, O. Bernard.
  
  Life-Cycle Assessment of Microalgal-Based Biofuels, in: Biomass, Biofuels and Biochemicals, Elsevier, 2018, pp. 507-550.
  
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• 94T. Morel Journel.
  
  Stratégies d'introduction d'organismes dans une environment spatialement structuré, SVS, Université Nice Sophia Antipolis, 2015.
• 95B. Polizzi, O. Bernard, M. Ribot.
  
  A time-space model for the growth of microalgae biofilms for biofuel production, in: Journal of Theoretical Biology, August 2017. [ DOI : 10.1016/j.jtbi.2017.08.017 ]
  
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• 96B. Sialve, N. Bernet, O. Bernard.
  
  Anaerobic digestion of microalgae as a necessary step to make microalgal biodiesel sustainable, in: Biotechnol. Advances, 2009, vol. 27, pp. 409-416.
• 97V. Tapissier.
  
  Optimisation d’un bioréacteur, Polytech Nice-Sophia, 2019.